An annotated and curated relational database of glycan structures reported in the literature. GlycoSuiteDB contains information on the glycan type, core type, linkages and anomeric configurations, mass, composition and the analytical methods used by the researchers to determine the glycan structure.
Stores structural, bibliographic, taxonomic, nuclear magnetic resonance (NMR) spectroscopic, and other data on natural carbohydrates and their derivatives published in the scientific literature. CSDB provides a collection of more than 15 000 carbohydrate structures published up to 1996. It furnishes information on bacterial and archaeal glycans and derivatives, as well as on plant and fungal glycans and glycoconjugates.
Integrates the structural and taxonomic data of all major public carbohydrate databases, as well as carbohydrates contained in the Protein Data Bank, which renders the database currently the most comprehensive and unified resource for carbohydrate structures worldwide. GlycomeDB retains the links to the original databases and is updated at weekly intervals with the newest structures available from the source databases.
A database of the glycosidic torsion angles derived from the glycan structures in the Protein Data Bank (PDB). The GFDB provides an intuitive glycan sequence search tool that allows the user to search complex glycan structures. It provides a glycan sequence search interface that allows the user to search complex glycan sequences. It also offers a preliminary filter option for removing such redundant protein entries for N-linked or O-linked glycan chains based on the sequence similarity of the parent protein.
The international glycan structure repository. GlyTouCan is a freely available, uncurated registry for glycan structures that assigns globally unique accession numbers to any glycan independent of the level of information provided by the experimental method used to identify the structure(s). Any glycan structure, ranging in resolution from monosaccharide composition to fully defined structures can be registered as long as there are no inconsistencies in the structure.
Offers a single entry to access threedimensional features of carbohydrate and carbohydrate polymers. Glyco3D is a portal of databases covering the three-dimensional features of monosaccharides, disaccharides, oligosaccharides, polysaccharides, glycosyltransferases, lectins, monoclonal antibodies against carbohydrates, and glycosaminoglycanbinding proteins. All three-dimensional structures are available for visual consultations and can be downloaded in commonly used formats for further uses.
Provides a centralised resource that combines glycan structure information with chromatographic separation and electrophoretic data. GlycoStore is an online resource that contains a collection of curated and in-house liquid chromatography (LC) and capillary electrophoresis (CE) experimental data on glycan structures with associated research literature. It integrates all publicly accessible data from GlycoBase.
Stores a collection of experimentally determined glycan structures. KEGG GLYCAN is a publicly accessible database where a unique structure corresponds to an entry annotated with various information for the structure, including composition, class, and mass, as well as a separate GIF image file for display. The database contains structures from CarbBank, recent publications, or KEGG Pathways. It also contains links to other databases in KEGG.
Provides sophisticated, freely accessible, open-source informatics tools and databases to support glycobiology and glycomic research. EUROCarbDB is a relational database containing glycan structures, their biological context and, when available, primary and interpreted analytical data from high-performance liquid chromatography, mass spectrometry and nuclear magnetic resonance experiments. Database content can be accessed via a web-based user interface. The database is complemented by a suite of glycoinformatics tools, specifically designed to assist the elucidation and submission of glycan structure and experimental data when used in conjunction with contemporary carbohydrate research workflows.
A freely accessible database containing over 900 collision cross section (CCS) values of glycans, oligosaccharide standards and their fragments. GlycoMob is organized into three major sections including: (i) a complete listing of structures and compositions stored in the database; (ii) biological content specific data collections, including glycans released from purified glycoproteins; and (iii) a description of analysed commercial glycans. In addition, GlycoMob can be searched in three ways: (i) by CSS value and underivatised mass; (ii) by glycoprotein; and (iii) by monosaccharide composition.
A meta-database involving 15 original databases in AIST and 5 cooperative databases in alliance with JCGG: Japan Consortium for Glycobiology and Glycotechnology. JCGGDB centers on a glycan structure database and accumulates information such as glycan preferences of lectins, glycosylation sites in proteins, and genes related to glycan syntheses from glycoscience and related fields.
Assists data interpretation to bring glycan analysis within the reach of any well-established laboratory. GlycoBase provides an open-access relational database of glycan structures and primary research data, accessed via a web-based interface. It was designed to support HILIC 2-aminobenzamide (2AB) approaches with an open-source philosophy intended to enhance software development, data management, and to progress the application of glycoinformatics in glycomics and glycoproteomics.
Gathers sources of information for assisting in the characterization of the molecular components of protein glycosylation. GlyConnect contains curated glycan structure information extracted from the literature and has been built up from GlycoSuiteDB. Data is organized into six categories: Taxonomy, Proteins, Tissue, Structure, Composition and Disease.
Compiles carbohydrate structures from the Protein Data Bank (PDB) in a standardized way. CSS intends to detect and assign carbohydrate 3D structures, analyzes them and provides the results. The database allows users to visualize protein, carbohydrate structures or torsion angles. Moreover, diagrams and plots can be generated in two different filetypes.
Provides access to annotated glycan structures. GDB:Structures is a database that contains glycans classified into three types: ligands, N-glycans and O-glycans. Users can retrieve lists of glycans by specifying the type and length of the glycans. The database also provides a web service for checking glycan structures in a user-uploaded structure file by getCARBO. GDB:Structures can assist users in determining the characteristics of the glycan structures of their interests and also allows structural biologists to verify their determined glycan structures.
Incorporates mass spectrometry experiment data from disparate sources. Then, it can organize them into a uniformed format for users to share. GlycomicsDB offers the possibility for collaborating researchers to access and manage the shared glycomics data in a systematic manner within a single resource. It can handle raw mass spectral data and glycan structures in a systematic and integrated way and it provides a user-friendly interface to create, edit and manage glycan structures as 3D models as well as 2D diagrams.
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