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GFDB / Glycan Fragment Database
A database of the glycosidic torsion angles derived from the glycan structures in the Protein Data Bank (PDB). The GFDB provides an intuitive glycan sequence search tool that allows the user to search complex glycan structures. It provides a glycan sequence search interface that allows the user to search complex glycan sequences. It also offers a preliminary filter option for removing such redundant protein entries for N-linked or O-linked glycan chains based on the sequence similarity of the parent protein.
Glyco 3D
Offers a single entry to access threedimensional features of carbohydrate and carbohydrate polymers. Glyco3D is a portal of databases covering the three-dimensional features of monosaccharides, disaccharides, oligosaccharides, polysaccharides, glycosyltransferases, lectins, monoclonal antibodies against carbohydrates, and glycosaminoglycanbinding proteins. All three-dimensional structures are available for visual consultations and can be downloaded in commonly used formats for further uses.
EUROCarbDB
Provides sophisticated, freely accessible, open-source informatics tools and databases to support glycobiology and glycomic research. EUROCarbDB is a relational database containing glycan structures, their biological context and, when available, primary and interpreted analytical data from high-performance liquid chromatography, mass spectrometry and nuclear magnetic resonance experiments. Database content can be accessed via a web-based user interface. The database is complemented by a suite of glycoinformatics tools, specifically designed to assist the elucidation and submission of glycan structure and experimental data when used in conjunction with contemporary carbohydrate research workflows.
GlycoMob
A freely accessible database containing over 900 collision cross section (CCS) values of glycans, oligosaccharide standards and their fragments. GlycoMob is organized into three major sections including: (i) a complete listing of structures and compositions stored in the database; (ii) biological content specific data collections, including glycans released from purified glycoproteins; and (iii) a description of analysed commercial glycans. In addition, GlycoMob can be searched in three ways: (i) by CSS value and underivatised mass; (ii) by glycoprotein; and (iii) by monosaccharide composition.
GlycoBase
Assists data interpretation to bring glycan analysis within the reach of any well-established laboratory. GlycoBase provides an open-access relational database of glycan structures and primary research data, accessed via a web-based interface. It was designed to support HILIC 2-aminobenzamide (2AB) approaches with an open-source philosophy intended to enhance software development, data management, and to progress the application of glycoinformatics in glycomics and glycoproteomics.
GlycomicsDB
Obsolete
Incorporates mass spectrometry experiment data from disparate sources. Then, it can organize them into a uniformed format for users to share. GlycomicsDB offers the possibility for collaborating researchers to access and manage the shared glycomics data in a systematic manner within a single resource. It can handle raw mass spectral data and glycan structures in a systematic and integrated way and it provides a user-friendly interface to create, edit and manage glycan structures as 3D models as well as 2D diagrams.
GDB:Structures / Glycoconjugate Data Bank:Structures
Obsolete
Provides access to annotated glycan structures. GDB:Structures is a database that contains glycans classified into three types: ligands, N-glycans and O-glycans. Users can retrieve lists of glycans by specifying the type and length of the glycans. The database also provides a web service for checking glycan structures in a user-uploaded structure file by getCARBO. GDB:Structures can assist users in determining the characteristics of the glycan structures of their interests and also allows structural biologists to verify their determined glycan structures.
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