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GlycanBuilder specifications

Information


Unique identifier OMICS_05681
Name GlycanBuilder
Alternative name GlycanBuilder2
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License BSD 3-clause “New” or “Revised” License, GNU Lesser General Public License version 3.0
Computer skills Medium
Stability Stable
Maintained Yes

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Documentation


Additional information


http://www.rings.t.soka.ac.jp/downloads.html Previous version: https://bitbucket.org/daviddamerell/glycanbuilderv/overview

Publications for GlycanBuilder

GlycanBuilder citations

 (3)
library_books

Carbohydrates in Cyberspace

2015
PMCID: 4462093
PMID: 26113848
DOI: 10.3389/fimmu.2015.00300

[…] confirmed glycan structures. beyond storing, curating, and providing searchable access to structural and functional data, unicarbkb offers a range of tools for data pre-process and analysis: glycanbuilder (, ) – for fast and intuitive drawing of glycan structures; glycomod tool (, ) – for predicting the possible glycan structures on proteins, from their experimentally determined masses. […]

library_books

High Throughput Analysis and Automation for Glycomics Studies

2014
PMCID: 4363487
PMID: 25814696
DOI: 10.1007/s10337-014-2803-9

[…] site-specific information on protein glycosylation, alongside various tools for retrieving and displaying the information., helpful with the graphical annotation of spectra are the web-based glycanbuilder and drawrings, allowing the facile construction of cfg or oxford type glycan cartoons [, ]. particularly useful for glycan analysis is the desktop application glycoworkbench []. […]

library_books

A Computational Framework for the Automated Construction of Glycosylation Reaction Networks

2014
PMCID: 4076241
PMID: 24978019
DOI: 10.1371/journal.pone.0100939

[…] for unique description of carbohydrate sequences) format in , or they can be graphically viewed by clicking the plot button of the enzyme viewer. this visualization component, in part, uses the glycanbuilder library . additional properties of the gtenz and ghenz classes can be viewed in the source code or gnat user manual. detailed documentation about these classes can be also accessed […]


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GlycanBuilder institution(s)
Graduate School of Engineering, Soka University, Tokyo, Japan; Faculty of Science and Engineering, Soka University, Tokyo, Japan; The Noguchi Institute, Tokyo, Japan; Glycoscience and Glycotechnology Research Group, AIST, Tsukuba, Japan
GlycanBuilder funding source(s)
Supported by the Life Science Database Integration Project conducted by the National Bioscience Database Center (NBDC) of the Japan Science and Technology Agency (JST).

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