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GlycoMiner specifications

Information


Unique identifier OMICS_07319
Name GlycoMiner
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Windows
Computer skills Advanced
Version 1.1.071
Stability Beta
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Oliver Ozohanics

Publication for GlycoMiner

GlycoMiner citations

 (4)
library_books

High Throughput Analysis and Automation for Glycomics Studies

2014
PMCID: 4363487
PMID: 25814696
DOI: 10.1007/s10337-014-2803-9

[…] and dallas et al. []. notable and freely available examples of de novo interpretation of mass spectrometric data include glyco-peakfinder [], glycospectrumscan [], glycopep grader [], sysbioware [], glycominer [], and glypid []. interpretation by matching recorded data to a previously annotated database can be performed for mass spectrometric data by glycopeptide search [], glycosearchms [], […]

library_books

QUANTITATIVE MASS SPECTROMETRIC ANALYSIS OF GLYCOPROTEINS COMBINED WITH ENRICHMENT METHODS

2014
PMCID: 4340049
PMID: 24889823
DOI: 10.1002/mas.21428

[…] to identify glycopeptides using high-throughput tandem ms data obtained from protein cocktails or complex proteome samples, such as branch-and-bound (peltoniemi, joenväärä, & renkonen, ), glycominer (ozohanics et al., ), gp finder (nwosu et al., ), and medical n-glycosite library (joenväärä et al., ). therefore, notable progress in development of software program for glycopeptides […]

library_books

Analytical technologies for identification and characterization of the plant N glycoproteome

2012
Front Plant Sci
PMCID: 3389394
PMID: 22783270
DOI: 10.3389/fpls.2012.00150

[…] tedious manual data interpretation represents the major bottle-neck for glycoprotein characterization. however, several computer programs have been developed, such as glysodeiq (), glymod (), glycominer (), and peptoonist (), to aid identification of intact n-linked glycopeptides and oligosaccharides, as well as cartoonisttwo () for automatic determination of the topology of o-glycan […]

library_books

Bioinformatics and molecular modeling in glycobiology

2010
PMCID: 2912727
PMID: 20364395
DOI: 10.1007/s00018-010-0352-4

[…] an exhaustive collection of fragmentation types, and a broad list of annotation options. mass spectra annotated with glycoworkbench can be uploaded into the eurocarbdb ms database. glyquest [] and glycominer [] are new tools that support high-throughput composition and primary structure determination of n-glycans attached to peptides, based on cid (collision induced dissociation) ms/ms (tandem […]


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GlycoMiner institution(s)
Hungarian Academy of Sciences, Chemical Research Center, Institute of Structural Chemistry, Budapest, Hungary

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