GlycoMod protocols

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GlycoMod specifications

Information


Unique identifier OMICS_02440
Name GlycoMod
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Catherine A. Cooper <>

Publication for GlycoMod

GlycoMod in pipeline

2014
PMCID: 4227548
PMID: 25184692
DOI: 10.1021/pr500591e

[…] 45 s; and exclusion mass width, 1.0 m/z low and 1.50 m/z high)., analysis of n-glycan data was performed using esi-compass 1.3 (bruker daltonics). monoisotopic masses obtained were searched against glycomod (http://web.expasy.org/glycomod/) for possible glycan compositions and subsequently verified by their corresponding ms/ms spectra. the relative abundance of each glycan in a sample […]


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GlycoMod in publications

 (56)
PMCID: 5807427
PMID: 29426894
DOI: 10.1038/s41598-018-21145-y

[…] were deduced from the molecular masses of the peptide ion carrying a single n-acetylglucosamine, commonly considered more intense. monosaccharide glycoform compositions were deduced using glycomod tool software. the remaining glycoforms were identified using the mass intervals between the glycoforms. the percentage distribution of the glycopeptides was calculated using the peak area […]

PMCID: 5751235
PMID: 29210993
DOI: 10.3390/ijms18122632

[…] time-of-flight (maldi-tof) mass spectrometry (ultraflex 3 tof/tof mass spectrometer; bruker daltonics, bremen, germany) (a–f). composition and structures of the glycans were predicted using the glycomod tool (available online: http://web.expasy.org/glycomod/) (). quantitative reproducibility test of each n-glycans levels were then evaluated as described previously []., statistical analyses […]

PMCID: 5678155
PMID: 29118454
DOI: 10.1038/s41598-017-15416-3

[…] ebolavirus gp1,2s., the gp1,2 protein of ebov/makona contains 17 potential n-glycosylation sites that are represented in fig. , obtained by analysis of the sequence using database search on expazy glycomod. the prediction of glycosylation sites does not differentiate based on cell or organism type but is only based on the presence of the n-glycosylation sequon asn -x-ser/thr within the protein […]

PMCID: 5670200
PMID: 29101385
DOI: 10.1038/s41598-017-15123-z

[…] rence mass of 922.0098 over a detection window of 50ppm., precursor ions eluting at the relevant normalized retention times indicated by shotgun glycan microarray experiments and determined by expasy glycomod to be fucosylated n-glycans were chosen for ms2. targeted ms/ms was performed for the fucosylated n-glycans in positive mode over a mass range of m/z 100–2000 with an acquisition time of 1.5  […]

PMCID: 5663998
PMID: 28853212
DOI: 10.1002/1878-0261.12134

[…] using compass data analysis version 4.0 software (bruker daltonics, billerica, ma, usa). monoisotopic masses detected in negative mode were assigned to possible monosaccharide compositions using the glycomod tool (cooper et al., ) available on the expasy server (http://au.expasy.org/tools/glycomod) with a mass tolerance of ± 0.5 da. glycan structures were identified based on manual annotation […]


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GlycoMod institution(s)
Proteome Systems Ltd, Sydney, NSW, Australia; Swiss Institute of Bioinformatics, Geneve, Switzerland; Macquarie University Center for Analytical Biotechnology, Sydney, Australia

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