Allows the retrieval of phosphorylation, acetylation, and N-glycosylation data of any protein of interest. PHOSIDA lists posttranslational modification sites associated with particular projects and proteomes or, alternatively, displays posttranslational modifications found for any protein or protein group of interest. In addition, structural and evolutionary information on each modified protein and posttranslational modification site is integrated. Importantly, Phosida links extensive peptide information to the sites, such as several peptides implicating the same site and temporal profiles of each site in response to stimulus (e.g., EGF stimulation).
Provides access to experimentally derived information about the human proteome including protein–protein interactions (PPIs), post-translational modifications (PTMs) and tissue expression. HPRD is an integrated knowledgebase for genomic and proteomic investigators. The database also includes (i) PhosphoMotif Finder that contains known kinase/phosphatase substrate and binding motifs, (ii) links to a signaling pathway resource called NetPath, (iii) a distributed annotation system, called Human Proteinpedia for enhanced community participation and allows the use of BLAST for querying mRNA/protein data.
Protein glycosylation affects cellular functions of the central nervous system (CNS). GlycoFly is a database for Drosophila N-linked glycopeptides. It has been established as a resource for study of neurological disorders.
Compiles information related to monosaccharides with a focus on notation. MonosaccharideDB is composed of more of 700 records. The repository is constructed around an annotation method leaning on basetype and substituent, combined to a notation scheme attributed to each alias. Users can query data of interest by ID, name or by properties. This project is part of the glycoscience.de project.
Profiling N-linked glycopeptides is a particularly promising method because the population of N-linked glycosites represents the proteomes of plasma, the cell surface, and secreted proteins at very low redundancy and provides a compelling link between the tissue and plasma proteomes. UniPep is a database of human N-linked glycosites.
Offers a collection of post-translational modifications (PTMs). dbPTM contains a dataset of experimentally verified PTMs supported by the literature and gives an access to databases and tools associated with PTM analysis. It integrates the emerging S-nitrosylation, S-glutathionylation and succinylation, from approximately 500 research articles which were extracted by text mining.
Provides a list of all available experimental information on agl (archaeal glycosylation) genes and proteins. Aglgenes offers a web interface that does not requires any particular training. It includes a single search field that allows user to search through all published experimental data on genes and proteins involved in archaeal N-glycosylation. This database allows users to submit updates on existing entries or new information on archaeal N-glycosylation pathway components.