GlycoWorkbench statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool GlycoWorkbench
info

Tool usage distribution map

info info

Associated diseases

info

Popular tool citations

chevron_left Glycosylation identification chevron_right
Want to access the full stats & trends on this tool?

Protocols

GlycoWorkbench specifications

Information


Unique identifier OMICS_05691
Name GlycoWorkbench
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Publication for GlycoWorkbench

GlycoWorkbench citations

 (18)
library_books

Helicobacter suis binding to carbohydrates on human and porcine gastric mucins and glycolipids occurs via two modes

2018
PMCID: 5955484
PMID: 29638186
DOI: 10.1080/21505594.2018.1460979

[…] he collision energy set to 95% with an activation time of 30 ms.Manual assignment of glycan sequences was done on the basis of knowledge of mammalian biosynthetic pathways, with the assistance of the Glycoworkbench tool (Version 2.1), and by comparison of retention times and MS2 spectra of oligosaccharides from reference glycosphingolipids []. […]

library_books

Helicobacter pylori SabA binding gangliosides of human stomach

2018
PMCID: 5955481
PMID: 29473478
DOI: 10.1080/21505594.2018.1440171

[…] MS2 was set to 500 counts. Data acquisition and processing were conducted with Xcalibur software (Version 2.0.7). Manual assignment of glycosphingolipid sequences was done with the assistance of the Glycoworkbench tool (Version 2.1), and by comparison of retention times and MS2 spectra of reference glycosphingolipids. […]

library_books

Characterization of porcine milk oligosaccharides over lactation between primiparous and multiparous female pigs

2018
Sci Rep
PMCID: 5856818
PMID: 29549280
DOI: 10.1038/s41598-018-23025-x

[…] ibur software (Thermo Fisher Scientific Inc., USA). The PMOs were identified based on both the twin isotope peaks and their MS/MS fragments. Composition and sequences were analyzed and confirmed with GlycoWorkbench software. The relative abundance of oligosaccharide in each sample was evaluated by comparing the peak area of each oligosaccharide component with that of β-cyclodextrin in extracted io […]

library_books

Bioengineering of rFVIIa Biopharmaceutical and Structure Characterization for Biosimilarity Assessment

2018
PMCID: 5874873
PMID: 29351237
DOI: 10.3390/bioengineering5010007

[…] 4 (Bruker Daltonics) and spectra were evaluated using the GlycoPeakfinder (EuroCarbDB, European Bioinformatics Institute, Heidelberg, Germany) software. Assigned glycan structures were built with the GlycoWorkbench software (1.1 version, EuroCarbDB).Intact mass of biotherapeutics was assessed by MALDI-TOF-MS. Protein standard II (Bruker Daltonics) was used as an external calibration standard. Aliq […]

library_books

Profiling of different pancreatic cancer cells used as models for metastatic behaviour shows large variation in their N glycosylation

2017
Sci Rep
PMCID: 5709460
PMID: 29192278
DOI: 10.1038/s41598-017-16811-6

[…] rated average spectra using FlexAnalysis 3.4 (Stable Build 76) and the open-source software mMass (http://www.mmass.org). Compositional annotations as well as MS/MS peak annotations were performed in GlycoWorkbench 2.1 stable build 146 (http://www.eurocarbdb.org/) using the Glyco-Peakfinder tool (http://www.eurocarbdb.org/ms-tools/). Calibration (see Supplemental Table ) and targeted data extracti […]

library_books

Cryptosporidium parvum vaccine candidates are incompletely modified with O linked N acetylgalactosamine or contain N terminal N myristate and S palmitate

2017
PLoS One
PMCID: 5549699
PMID: 28792526
DOI: 10.1371/journal.pone.0182395

[…] in the C. parvum Iowa-II predicted proteome and cross-searched within the entire NCBI nr database, using the online NCBI BLASTP algorithm (https://blast.ncbi.nlm.nih.gov/Blast.cgi) [–]. The software, Glycoworkbench v2.1, release 146, was used to help calculate glycan compositions []. O-glycosylated peptides utilized HexNAc almost exclusively. Due to the labile nature of O-linked glycans, b and y i […]


Want to access the full list of citations?
GlycoWorkbench institution(s)
Biology Department, California State University, Northridge, CA, USA

GlycoWorkbench reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review GlycoWorkbench