GlycoWorkbench specifications

Information


Unique identifier OMICS_05691
Name GlycoWorkbench
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Publication for GlycoWorkbench

GlycoWorkbench in publications

 (98)
PMCID: 5955484
PMID: 29638186
DOI: 10.1080/21505594.2018.1460979

[…] collision energy set to 95% with an activation time of 30 ms., manual assignment of glycan sequences was done on the basis of knowledge of mammalian biosynthetic pathways, with the assistance of the glycoworkbench tool (version 2.1), and by comparison of retention times and ms2 spectra of oligosaccharides from reference glycosphingolipids []., blood group antigen binding adhesin, […]

PMCID: 5955481
PMID: 29473478
DOI: 10.1080/21505594.2018.1440171

[…] ms2 was set to 500 counts. data acquisition and processing were conducted with xcalibur software (version 2.0.7). manual assignment of glycosphingolipid sequences was done with the assistance of the glycoworkbench tool (version 2.1), and by comparison of retention times and ms2 spectra of reference glycosphingolipids., h. pylori neutrophil activating protein, liquid chromatography/electrospray […]

PMCID: 5908620
PMID: 29642144
DOI: 10.1097/MD.0000000000010208

[…] bruker daltonics, bremen, germany) according to a previously described protocol.[] measurements were obtained in positive ion mode, and mass-to-charge ratio (m/z) data were annotated using glycoworkbench software. the relative intensity was analyzed and generated using flexanalysis software (bruker daltonics) based on the maldi-tof-ms intensity., statistical analyses were performed […]

PMCID: 5939987
PMID: 29553863
DOI: 10.1080/19420862.2018.1433974

[…] glycans areas within a spectrum were normalized to the total sum of areas, which was further used for repeatability and derived trait calculation. figures were assigned with structures created in glycoworkbench 2.1 build 146, following cfg annotation., abdalbumin binding domainadccantibody-dependent cell-mediated cytotoxicitybalbronchoalveolar lavagebsabovine serum albumindigadimeric […]

PMCID: 5856818
PMID: 29549280
DOI: 10.1038/s41598-018-23025-x

[…] the ms spectrum, hplc chromatographic profile and the ms/ms spectrum for each candidate pmo peak observed in the mass spectra. each sialic acid or neutral isomer was then annotated with the “glycoworkbench” software (version 2.1). the composition and proposed structures of the pmos confirmed by both isotopic labelled twin peaks and ms/ms profile analyses during course of lactation […]


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GlycoWorkbench institution(s)
Biology Department, California State University, Northridge, CA, USA

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