GlycReSoft statistics

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GlycReSoft specifications

Information


Unique identifier OMICS_05674
Name GlycReSoft
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format mzML,mzXML
Operating system Unix/Linux, Windows
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements
C compiler, Make, numpy, scipy
Maintained Yes

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Documentation


Maintainer


  • person_outline Joseph Zaia <>

Additional information


https://code.google.com/archive/p/glycresoft/ https://mobiusklein.github.io/glycresoft/docs/_build/html/

Publications for GlycReSoft

GlycReSoft in publications

 (5)
PMCID: 5923415
PMID: 29662015
DOI: 10.3390/md16040128

[…] major repeating unit of the isolated ks was the disulfated disaccharide, (-3gal6sβ1→4glcnac6sβ1-). the raw data was deconvoluted using decontools, and then the output of decontools was processed by glycresoft to generate matching structures and to provide relative quantitative information []. a total of 31 oligosaccharides were matched by glycresoft, which ranged from degree of polymerization […]

PMCID: 5549699
PMID: 28792526
DOI: 10.1371/journal.pone.0182395

[…] algorithm failed to annotate the product ions appropriately. therefore, the glycopeptide results from the peaksdb search were exported in mzidentml 1.1 format [], manually verified, then provided to glycresoft (a software package developed in-house for glycopeptide discovery and annotation). the code for glycresoft, which is currently in active development with periodic updates and improvements, […]

PMCID: 4184449
PMID: 25153361
DOI: 10.1021/pr500506z

[…] automated data analysis, entire lc–ms data files were deconvoluted using decontools. deconvoluted data were matched and scored against theoretical peptide and glycopeptide neutral mass lists, using glycresoft, with a 10 ppm mass tolerance. lists of glycopeptides and glycoforms used for searching have been provided in ., for quantitative evaluation of the ability to perform tandem ms […]

PMCID: 4082394
PMID: 24905078
DOI: 10.1021/ac501301v

[…] this method relies on hilic lc-fourier transform mass spectrometry (ftms) analysis combined with heparin lyase ii digestion. data analysis utilizes a newly developed bioinformatics software package, glycresoft. the oligosaccharides (dp2 to dp6) generated from lmwhs prepared by three different manufacturers are compared., lmwhs, of enoxaparin sodium from sanofi-aventis (lovenox) and enoxaparin […]

PMCID: 3901230
PMID: 24957775
DOI: 10.3390/metabo2041060

[…] from maldi and esi-ms []. in addition software has been created to profile glycans present in samples separated and analysed using liquid chromatography/mass spectrometry (lc/ms). an example is the glycresoft software package, created to allow the automated recognition of glycans from lc/ms data []., many internet tools are also available which provide access to software that extract […]


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GlycReSoft institution(s)
Program for Bioinformatics, Boston University, Boston, MA, USA; Department of Math and Statistics, Boston University, Boston, MA, USA; Department of Biochemistry, Boston University, Boston, MA, USA
GlycReSoft funding source(s)
Supported by National Institute of Health 1U01CA221234.

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