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GlyProt specifications

Information


Unique identifier OMICS_18509
Name GlyProt
Interface Web user interface
Restrictions to use None
Input data A PDB ID.
Input format PDB
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Andreas Bohne-Lang <>

Publications for GlyProt

GlyProt in publications

 (26)
PMCID: 5899191
PMID: 29467319
DOI: 10.1128/JVI.02066-17

[…] solver (). the binding surfaces were calculated by using the proteins, interfaces, structures, and assemblies server (). glycans were modeled by using the in silico glycosylation server glyprot ()., coordinates and diffraction data have been deposited in the protein data bank under accession no. 5vxr., we thank charles rice, steven foung, mansun law, harry greenberg, and jean […]

PMCID: 5923477
PMID: 29642453
DOI: 10.3390/v10040183

[…] 3lzg) and na (pdb code: 4b7q) together were used as the model for human influenza h1n1. after homology modeling, glycans were added onto the potential n-glycosylation sites in ha and na using the glyprot server [,]. all n-linked glycans (n-glycans) were selected as the basic conformation and the structures were visualized by the pymol molecular graphics system, version 1.8, schrödinger, llc […]

PMCID: 5703309
PMID: 29109276
DOI: 10.1073/pnas.1712377114

[…] was introduced into the crystal structure (pdb id code 4o5i) using the program pymol. basic n-linked glycans were added to predicted n-linked glycosylation sites in the crystal structure using the glyprot web server: www.glycosciences.de/modeling/glyprot/php/main.php., human monoclonal antibodies were previously isolated from donor peripheral blood mononuclear cells following vaccination […]

PMCID: 5003320
PMID: 27562261
DOI: 10.1038/nmicrobiol.2016.128

[…] score, and the agreement of the model to the em density as measured by the emringer score,., energy minimized glcnac2man3 glycans were added to the final c2g4/c13c6/gpδtm protein structure using glyprot. the glycan torsion angles were manually adjusted to fit into density and residues without supporting density were removed. the glycans were further refined into the density using coot […]

PMCID: 4598777
PMID: 26274980
DOI: 10.3390/biom5031832

[…] performed using pymol molecular graphic system, v1.3 (schrödinger, llc) and rasmol v2.7.5, respectively. n-glycans were modeled on asn71 of ncg in silico using the default torsion angles provided by glyprot []. the solvent accessibilities of asn71 and the individual methionine residues of ncg were determined using naccess, a solvent accessibility determination program []. the atomic accessible […]


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GlyProt institution(s)
German Cancer Research Center Heidelberg, Central Spectroscopy–Molecular Modeling, Heidelberg, Germany
GlyProt funding source(s)
Supported by a grant from the German Research Council (Deutsche Forschungsgemeinschaft, DFG) within the digital library program.

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