Protocols

GlyVicinity specifications

Information


Unique identifier OMICS_21256
Name GlyVicinity
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 2.0
Stability Stable
Maintained Yes

Publications for GlyVicinity

GlyVicinity citations

 (2)
call_split

Carbohydrate–Aromatic Interactions in Proteins

2015
J Am Chem Soc
PMCID: 4676033
PMID: 26561965
DOI: 10.1021/jacs.5b08424
call_split See protocol

[…] To generate the protein–carbohydrate interaction database, context data were obtained from GlyVicinity, for amino acids with any atom within 4.0 Å of any atom of a carbohydrate moiety. In order to deal with any potential mistakes that structures deposited in the PDB may contain, which is a […]

library_books

Bioinformatics and molecular modeling in glycobiology

2010
PMCID: 2912727
PMID: 20364395
DOI: 10.1007/s00018-010-0352-4

[…] lycosylation sites were analyzed based on glycosylated proteins found in the PDB []. Statistical properties of O-type glycosylation were analyzed based on entries of the O-GLYCBASE []. The GlySeq and GlyVicinity online services [] allow for interactive exploration of the statistical and conformational properties of glycosylation sites and their surroundings. […]

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