GMcloser protocols

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description
GMcloser computational protocol

GMcloser specifications

Information


Unique identifier OMICS_00042
Name GMcloser
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Pacific Biosciences, Oxford Nanopore
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Shunichi Kosugi <>

Publication for GMcloser

GMcloser IN pipeline

2016
PMCID: 4833424
PMID: 26975196
DOI: 10.1093/dnares/dsw006

[…] n50 values than the other assemblers. this may be because only a single mp library was generated for these species. the final assemblies for ‘wakaba’ and ‘zanpa’ were generated by gap-closing with gmcloser and resulted in 563 mb (n50 length, 109 kb) and 397 mb (n50 length, 111 kb), respectively (table 1). as with ‘nagirizaki’, the genome size of ‘zanpa’ estimated by flow cytometry (370 mb; […]

GMcloser institution(s)
Kazusa DNA Research Institute, Kisarazu, Chiba, Japan

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