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GMD specifications

Information


Unique identifier OMICS_02531
Name GMD
Alternative name Golm Metabolome Database
Restrictions to use None
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/Golm_Metabolome_Database

Maintainer


  • person_outline Dr. Jan Hummel

Publication for Golm Metabolome Database

GMD citations

 (70)
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Promiscuous activities of heterologous enzymes lead to unintended metabolic rerouting in Saccharomyces cerevisiae engineered to assimilate various sugars from renewable biomass

2018
Biotechnol Biofuels
PMCID: 5950193
PMID: 29785207
DOI: 10.1186/s13068-018-1135-7
call_split See protocol

[…] or peak detection and deconvolution of mass spectra. The pre-processed data were uploaded into SpectConnect (http://spectconnect.mit.edu) [] for peak alignment and for generating the data matrix with Golm Metabolome Database (GMD) mass spectral reference library []. The normalized abundance values for each metabolite were obtained by dividing peak intensity with dry cell weight. For statistical an […]

library_books

Rhizosphere Protists Change Metabolite Profiles in Zea mays

2018
Front Microbiol
PMCID: 5946010
PMID: 29780370
DOI: 10.3389/fmicb.2018.00857

[…] e using TagFinder (). Using this latter program, a retention time index (RI) was calculated from the added n-alkanes. Metabolites were identified by comparison of RI-values and fragment masses to the Golm metabolome database (; ) using the programs TagFinder and AMDIS (NIST). […]

library_books

The Use of Metabolomics and Inflammatory Mediator Profiling Provides a Novel Approach to Identifying Pediatric Appendicitis in the Emergency Department

2018
Sci Rep
PMCID: 5840182
PMID: 29511263
DOI: 10.1038/s41598-018-22338-1

[…] ted mass spectra were processed using the Metabolite Detector 2.06 software (Technische Universitat Carolo-Wilhelmina zu Braunschweig, Braunschweig, Germany). Metabolites were identified based on the GOLM metabolome database–. Named metabolites are Metabolomics Standards Initiative (MSI) level 2 (putatively annotated compounds). […]

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Primed primary metabolism in systemic leaves: a functional systems analysis

2018
Sci Rep
PMCID: 5760635
PMID: 29317679
DOI: 10.1038/s41598-017-18397-5
call_split See protocol

[…] (Version 4.22, LECO, St. Joseph, USA). Identification of metabolites was manually supervised with the TagFinder software and the mass spectra and retention time index (RI) reference collection of the Golm Metabolome Database,. Peak heights were normalized to U-13C-sorbitol and fresh weights.Figure 1 […]

library_books

Characterization of the Primary Metabolome of Brachystegia boehmii and Colophospermum mopane under Different Fire Regimes in Miombo and Mopane African Woodlands

2017
Front Plant Sci
PMCID: 5735074
PMID: 29312388
DOI: 10.3389/fpls.2017.02130

[…] re (v 2.71). Primary metabolites were annotated using the TagFinder software, matching mass spectral and retention time index to the reference collection of authenticated standard substances from the Golm Metabolome Database (). The relative abundance of primary metabolites was normalized dividing the corresponding values by the dry weight (DW) of the samples and the signal intensity of the intern […]

library_books

Characterization of the Wheat Leaf Metabolome during Grain Filling and under Varied N Supply

2017
Front Plant Sci
PMCID: 5712589
PMID: 29238358
DOI: 10.3389/fpls.2017.02048

[…] Lisec et al., ; Watanabe et al., ). Multiparallel chromatography data processing and compound identification were performed by TagFinder software (Luedemann et al., ) using reference spectra from the Golm Metabolome Database for compound identification (Kopka et al., ). […]

Citations

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GMD institution(s)
Max Planck Institute of Molecular Plant Physiology, Golm, Germany

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