GMS statistics

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Citations per year

Number of citations per year for the bioinformatics software tool GMS
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Tool usage distribution map

This map represents all the scientific publications referring to GMS per scientific context
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GMS specifications

Information


Unique identifier OMICS_19507
Name GMS
Alternative name Genome Modeling System
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License GNU Lesser General Public License version 3.0
Computer skills Advanced
Stability Stable
Source code URL https://codeload.github.com/genome/gms/tar.gz/gms-stable-2014.01.26
Maintained Yes

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Versioning


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Maintainers


  • person_outline Obi L. Griffith
  • person_outline Malachi Griffith

Publication for Genome Modeling System

GMS citation

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Resistance promoting effects of ependymoma treatment revealed through genomic analysis of multiple recurrences in a single patient

2018
PMCID: 5880262
PMID: 29440180
DOI: 10.1101/mcs.a002444

[…] GN]) version 0.7.10 (params: -t 8::), then merged and deduplicated using Picard version 1.113 (https://broadinstitute.github.io/picard/). Somatic variants were called from the combined data using our Genome Modeling System () as follows.SNVs were detected using the union of four callers: (1) SAMtools () version r982 (params: mpileup -BuDs) intersected with Somatic Sniper () version 1.0.4 (params: […]


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GMS institution(s)
The Genome Institute, Washington University in St. Louis, St. Louis, MI, USA; Department of Genetics, Washington University School of Medicine, St. Louis, MI, USA; Department of Medicine, Washington University School of Medicine, St. Louis, MI, USA; Siteman Cancer Center, Washington University School of Medicine, St. Louis, MI, USA; Department of Molecular Microbiology, Washington University School of Medicine, St. Louis, MI, USA
GMS funding source(s)
Supported by an NHGRI Large Scale Sequencing and Analysis Center grant (U54 HG003079), NHGRI Genome Sequencing Informatics Tools (GS-IT) Program U01 HG006517 and an Amazon AWS in Education Research Grant Award.

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