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GNAT specifications

Information


Unique identifier OMICS_06782
Name GNAT
Alternative name Glycosylation Network Analysis Toolbox
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java, MATLAB
Computer skills Advanced
Stability Stable
Maintained Yes

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No version available

Documentation


Publication for Glycosylation Network Analysis Toolbox

GNAT citations

 (3)
library_books

What can mathematical modelling say about CHO metabolism and protein glycosylation?

2017
PMCID: 5310201
PMID: 28228925
DOI: 10.1016/j.csbj.2017.01.005

[…] thereby reducing the parameterisation of the model. recently, the same group developed a software for the automated creation, analysis and visualization of glycosylation reaction networks, called gnat (glycosylation network analysis toolbox) , . gnat was further expanded to include a higher number of enzymes ., kim et al. also exploited the modularity of the glycosylation pathways to propose […]

library_books

A systematic framework to derive N glycan biosynthesis process and the automated construction of glycosylation networks

2016
PMCID: 4965717
PMID: 27454116
DOI: 10.1186/s12859-016-1094-6

[…] to automatically construct n-glycosylation networks in matlab with the involvement of the 27 most-known enzyme reaction rules of 22 enzymes, as an extension of previous model kb2005. a toolbox named glycosylation network analysis toolbox (gnat) is applied to define network properties systematically, including linkages, stereochemical specificity and reaction conditions of enzymes. our network […]

library_books

A Computational Framework for the Automated Construction of Glycosylation Reaction Networks

2014
PMCID: 4076241
PMID: 24978019
DOI: 10.1371/journal.pone.0100939

[…] enables automated glycosylation network model construction and analysis by integrating knowledge of glycan structure and enzyme biochemistry. all the implemented features are provided as part of the glycosylation network analysis toolbox (gnat), an open-source, platform-independent, matlab based toolbox for studies of systems glycobiology., glycosylation is among the most common […]


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GNAT institution(s)
Department of Chemical and Biological Engineering and The NY State Center for Excellence in Bioinformatics and Life Sciences, State University of New York, Buffalo, NY, USA

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