Gneg-mPLoc statistics

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Gneg-mPLoc specifications

Information


Unique identifier OMICS_05420
Name Gneg-mPLoc
Alternative name Gneg-Ploc
Interface Web user interface
Restrictions to use None
Input data A Gram-negative protein sequence.
Input format FASTA
Computer skills Basic
Version 2.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline Hong-Bin Shen <>

Publication for Gneg-mPLoc

Gneg-mPLoc in publications

 (4)
PMCID: 5406399
PMID: 28496441
DOI: 10.3389/fimmu.2017.00463

[…] the bioinformatics workflow and total numbers of proteins identified by each bioinformatics algorithm (predictor) are shown (figure ). the predictors for subcellular localization (cello, psortb, and gneg-mploc) found 523 proteins (by 1 or more predictor) located in the om of l. interrogans, 24 were identified by all three predictors. a total of 1,196 proteins were predicted to contain a signal […]

PMCID: 4957856
PMID: 27448791
DOI: 10.1186/s12866-016-0769-5

[…] version 2.7.2 (http://www.blast2go.com/) was used, which is a homology-based approach for gene ontology enrichment analysis []. the protein subcellular locations were identified by the program gneg-mploc version 2.0 (http://www.csbio.sjtu.edu.cn/bioinf/gneg-multi/#) which combines the gene ontology information and functional domain with the sequential evolution information […]

PMCID: 3603346
PMID: 23518919
DOI: 10.3389/fmicb.2013.00052

[…] not included in the discussion of this study., dna sequence synteny was evaluated with the artemis comparison tool (act; ). protein subcellular localization analysis was performed with psort () and gneg-mploc (). signal peptides and distinction between the general export pathway (sec) and the twin-arginine translocase (tat) mechanism were predicted on the basis of hidden markov models (hmms) […]

PMCID: 2704936
PMID: 19054114
DOI: 10.1111/j.1574-6976.2008.00141.x

[…] is just the integration of results from the four global predictors of subcellular localization with predictions available in batch mode (psortb, proteome analyst, cello ii and p-classifier)., gneg-ploc provides precomputed results for proteins that have no subcellular localization annotations or annotated with uncertain terms such as ‘probable’, ‘potential’, ‘likely’, or ‘by similarity’ […]


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Gneg-mPLoc institution(s)
Institute of Image Processing & Pattern Recognition, Shanghai Jiaotong University, Shanghai, China; Gordon Life Science Institute, San Diego, CA, USA

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