GNT pipeline

GNT specifications


Unique identifier OMICS_13169
Name GNT
Alternative name Genome Topology Network
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Perl
Computer skills Advanced
Version 1.1
Stability Stable
Maintained Yes



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  • person_outline Yan Zhou <>

Publication for Genome Topology Network

GNT citation

PMCID: 4756455

[…] instructions and stored at -80 °c until subsequent analysis. all samples were sequenced using the illumina hiseq2000 instrument, which produced paired-end reads of 101 nt, yielding average 3.5 gnt per each of fecal samples., the gut microbial composition of each sample was profiled using metaphlan [18]. metaphlan uses a unique set of markers for each species (and higher level clades) […]

GNT institution(s)
State Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, Shanghai, China; Shanghai-MOST Key Laboratory of Health and Disease Genomics, Chinese National Human Genome Center at Shanghai, China
GNT funding source(s)
This work was supported by the National Natural Science Foundation of China (grant numbers 31071223, 30700465, and 31071158), MOST of P.R.C. (National High-tech R&D 863 Program grant number 2012AA020409, National Basic Research 973 Program grant number 2011CB111610, and National Basic Scientific Research Fund grant number 2009FY120100), and the Science and Technology Commission of Shanghai Municipality (grant numbers 12ZR1421300, 11JC1400900, and 10QA1400600).

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