GNUMAP specifications

Unique identifier:
OMICS_00583
Alternative names:
GNUMAP-BS, GNUMAP-hashmap, GNUMAP-FM, GNUMAP-STL
Interface:
Command line interface
Output data:
A file with the highest scoring match for each read and a file including the genome.
Operating system:
Unix/Linux
Parallelization:
MPI
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Name:
Genomic Next-generation Universal MAPper
Software type:
Application/Script
Restrictions to use:
None
Biological technology:
Illumina
Programming languages:
C, C++
License:
GNU General Public License version 3.0
Version:
4.0
Requirements:
C compiler

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GNUMAP distribution

download

GNUMAP support

Documentation

Maintainers

  • Mark Clement <>
  • Nathan Clement <>
  • Quinn Snell <>
  • Evan Johnson <>

Additional information

http://scholarlypages.org/Articles/bioinformatics/ibi-1-001.php?jid=bioinformatics#con https://sourceforge.net/projects/gnumap/

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Publications

Institution(s)

Department of Computer Science, Brigham Young University, Provo, UT, USA; Department of Statistics, Brigham Young University, Provo, UT, USA; Department of Oncological Sciences, Huntsman Cancer Institute, University of Utah, Salt Lake City, UT, USA

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