GNUMAP specifications

Information


Unique identifier OMICS_00583
Name GNUMAP
Alternative names Genomic Next-generation Universal MAPper, GNUMAP-BS, GNUMAP-hashmap, GNUMAP-FM, GNUMAP-STL
Software type Application/Script
Interface Command line interface
Restrictions to use None
Output data A file with the highest scoring match for each read and a file including the genome.
Biological technology Illumina
Operating system Unix/Linux
Programming languages C, C++
Parallelization MPI
License GNU General Public License version 3.0
Computer skills Advanced
Version 4.0
Stability Stable
Requirements C compiler
Maintained Yes

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Documentation


Maintainers


  • person_outline Mark Clement <>
  • person_outline Nathan Clement <>
  • person_outline Quinn Snell <>
  • person_outline Evan Johnson <>

Additional information


http://scholarlypages.org/Articles/bioinformatics/ibi-1-001.php?jid=bioinformatics#con https://sourceforge.net/projects/gnumap/

Publications for Genomic Next-generation Universal MAPper

GNUMAP institution(s)
Department of Computer Science, Brigham Young University, Provo, UT, USA; Department of Statistics, Brigham Young University, Provo, UT, USA; Department of Oncological Sciences, Huntsman Cancer Institute, University of Utah, Salt Lake City, UT, USA

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