GO-Mapper specifications

Information


Unique identifier OMICS_18767
Name GO-Mapper
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data An input file containing the gene to GO links, the GO tree and the gene names.
Output format TSV
Operating system Unix/Linux, Windows
Programming languages Perl
Computer skills Advanced
Stability No
Maintained No

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Publication for GO-Mapper

GO-Mapper in publications

 (3)
PMCID: 3226191
PMID: 19811685
DOI: 10.1186/1471-2105-10-S11-S2

[…] types of genes, and known drug targets represented on affymetrix chicken genome array. to facilitate functional annotation of other arrays and microarray experimental datasets we developed an array go mapper (agom) tool to help researchers to quickly retrieve corresponding functional information for their dataset., results from this study will directly facilitate annotation of other chicken […]

PMCID: 3313274
PMID: 19811674
DOI: 10.1186/1471-2105-10-S11-S1

[…] functional annotation of the chicken genome, improving both the breadth and quality of annotation of genes []. the method can facilitate functional annotation of other microarrays via an array go mapper (agom) tool to help researchers quickly retrieve corresponding functional information., zhou et al. [] develop cptra (cross-platform transcriptome analysis) to analyze next generation […]

PMCID: 2020489
PMID: 17711575
DOI: 10.1186/1471-2164-8-285

[…] abundance in the mutant was calculated from the transcriptome analysis by multiplying the relative expression in the mutant by values obtained from the wild-type strain (25)., we also utilized the go mapper tool from sgd in order to determine if any enrichment for specific functional groups exists in any of the affected groups. for this analysis we combined several groups together (i.e. change […]


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GO-Mapper institution(s)
Department of Pathology, Josephine Nefkens Institute, Rotterdam, Netherlands
GO-Mapper funding source(s)
Supported by the Revolving Fund of the Erasmus MC (01-432).

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