GO-Mapper statistics

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Citations per year

Number of citations per year for the bioinformatics software tool GO-Mapper
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Tool usage distribution map

This map represents all the scientific publications referring to GO-Mapper per scientific context
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Associated diseases

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Popular tool citations

chevron_left Gene set enrichment analysis chevron_right
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GO-Mapper specifications

Information


Unique identifier OMICS_18767
Name GO-Mapper
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data An input file containing the gene to GO links, the GO tree and the gene names.
Output format TSV
Operating system Unix/Linux, Windows
Programming languages Perl
Computer skills Advanced
Stability No
Maintained No

Versioning


No version available

Maintainer


This tool is not available anymore.

Publication for GO-Mapper

GO-Mapper citations

 (3)
library_books

BACA: bubble chArt to compare annotations

2015
BMC Bioinformatics
PMCID: 4377007
PMID: 25652236
DOI: 10.1186/s12859-015-0477-4

[…] en comparing multiple experimental conditions (e.g. treatments, disease states, etc.). Several tools are available to visually compare the results from multiple enrichment analysis, such as GOBar [], Go-Mapper [], high-throughput GoMiner [], the GOEAST [] and REViGO []. These are specific tools that focus more on the integration than the visualization aspect.Here we provide BACA, a novel R-based p […]

library_books

Genome wide polysomal analysis of a yeast strain with mutated ribosomal protein S9

2007
BMC Genomics
PMCID: 2020489
PMID: 17711575
DOI: 10.1186/1471-2164-8-285

[…] F) in order to distinguish between the effects of the two parameters, yet we did not obtain statistically significant results, probably because of the strong linkage between them.We also utilized the GO mapper tool from SGD in order to determine if any enrichment for specific functional groups exists in any of the affected groups. For this analysis we combined several groups together (i.e. change […]

library_books

GO Diff: Mining functional differentiation between EST based transcriptomes

2006
BMC Bioinformatics
PMCID: 1388240
PMID: 16480524
DOI: 10.1186/1471-2105-7-72

[…] rably more subtle changes in gene networks []. To address this, methods have been developed to evaluate GO terms utilizing Holistic Expression information (GHE) to obtain functional analysis, such as GO-Mapper, GOAL and GOdist [-].The availability of the huge amount of expressed sequence tags (ESTs)[] have made it possible to construct various tissue specific transcriptomes, thus allowing much mor […]


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GO-Mapper institution(s)
Department of Pathology, Josephine Nefkens Institute, Rotterdam, Netherlands
GO-Mapper funding source(s)
Supported by the Revolving Fund of the Erasmus MC (01-432).

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