GO::TermFinder pipeline

GO::TermFinder specifications

Information


Unique identifier OMICS_10339
Name GO::TermFinder
Alternative names GO-Term Finder, GO-TermFinder
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A list of genes, one per line or a file containing lists of gene
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Version 0.86
Stability Stable
Maintained Yes

Versioning


Add your version

Maintainer


  • person_outline Gavin Sherlock <>

Information


Unique identifier OMICS_10339
Name GO::TermFinder
Alternative names GO-Term Finder, GO-TermFinder
Interface Web user interface
Restrictions to use None
Input data A list of genes, one per line or a file containing lists of gene
Programming languages Perl
Computer skills Basic
Version 0.86
Stability Stable
Maintained Yes

Download


Maintainer


  • person_outline Gavin Sherlock <>

Publication for GO::TermFinder

GO::TermFinder citations

 (3)
2017
PMCID: 5567665

[…] fragments that uniquely aligned to all genes, and ā€œlā€ is the number of bases of gene a. go functional enrichment analysis was carried out according to go terminology determined using the online cgd go term finder tool (http://www.candidagenome.org/cgi-bin/go/gotermfinder)., the chromatin immunoprecipitation (chip) protocol was adapted from nobile et al. (2012) [54]. c. albicans cells were grown […]

2016
PMCID: 5174095

[…] go terms in the database3, calculating the gene numbers for every term, and subsequently using the hypergeometric test to identify significantly enriched go terms in the input list of degs, based on go::termfinder4., to further analyze the degs, the strategy of weighted gene co-expression network (wgcna) was used to identify the key genes. co-expression focused on dynamic changes in the gene […]

2011
PMCID: 3157476

[…] the java treeview software program [42]. hierchical clustering and student's t-tests were performed using pearson correlation with the mev software program [43]. gene ontology was analyzed using go term finder http://go.princeton.edu/cgi-bin/gotermfinder[29]., conceived and designed the experiments: jpp, js, jdm. performed the experiments: jpp, esf, cb. analyzed the data: jpp, sl, js. […]

GO::TermFinder institution(s)
Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA

GO::TermFinder reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review GO::TermFinder