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Protocols

Goanna specifications

Information


Unique identifier OMICS_22590
Name Goanna
Interface Web user interface
Restrictions to use None
Input data Some protein accessions and a list of either nucleotide or protein sequences.
Input format TSV+FASTA
Output format HTML,TSV
Computer skills Basic
Stability Stable
Maintained Yes

Additional information


http://www.agbase.msstate.edu/help/annahelp.htm http://www.agbase.msstate.edu/Education/NABDAWorkshop/tutorial_4/tutorial_4.htm

Goanna citations

 (53)
call_split

Using Human iPSC Derived Neurons to Uncover Activity Dependent Non Coding RNAs

2017
Genes
PMCID: 5748719
PMID: 29261115
DOI: 10.3390/genes8120401
call_split See protocol

[…] were carried out using two different approaches. First, we used tools available at the Mississippi State University AgBase portal (version 2.0) [] to assign ontologies to the transcripts of interest. GoAnna annotates genes by transferring ontologies based on sequence homology, and GoSlim further summarizes the results by providing a high-level annotation to analyzed genes. Basic local alignment se […]

library_books

Healthcare system barriers to long term follow up for adult survivors of childhood cancer in British Columbia, Canada: a qualitative study

2017
PMCID: 5956053
PMID: 29222704
DOI: 10.1007/s11764-017-0667-3

[…] s time went on they simply lost touch with survivors:It’s expensive to come to Vancouver. They have to pay for travel and accommodation themselves so often times if they feel well they decide I’m not goanna come this year. If it’s five, six hundred dollars for a plane ticket to get down and I don’t feel bad, I’ll just cancel my appointment. And then they forget to make it the next year and eventua […]

library_books

Evolution of risk preference is determined by reproduction dynamics, life history, and population size

2017
Sci Rep
PMCID: 5571215
PMID: 28839262
DOI: 10.1038/s41598-017-06574-5

[…] ng at all, at the cost of procuring only a small part of any prey item that is detected (e.g., )? Should Australian Martu women hunt for large but difficult-to-catch kangaroo, or ubiquitous but small goanna lizards? Individuals vary in their propensity to select the riskier of the possible strategies at these day-to-day decision points, as well as in their risk-related choices at crucial junctures […]

library_books

A monograph of the Australopacific Saprininae (Coleoptera, Histeridae)

2017
Zookeys
PMCID: 5672588
PMID: 29200920
DOI: 10.3897/zookeys.689.12021

[…] ., Baily Knob summit, 6.xii.1998–6.ii.1999, 17°39'S, 145°30'E, 1100 m, Monteith & Cook leg., intercept (QM); 3 specs., McAfee’s Lookout, 27°26'S, 152°53'E, 300 m, 18.x.1999, G.B. Monteith, under dead goanna (QM); 7 specs., Fraser Island, Yidney Scrub nr. VB52, 1.–2.xii.1975, G. Thompson & A. Slater (QM); 1 spec., Russel R., at Bellenden, Ker Landing, 5 m, 24.x.–9.xi.1981, Baited window trap (QM); […]

library_books

The impact of health promotion on trachoma knowledge, attitudes and practice (KAP) of staff in three work settings in remote Indigenous communities in the Northern Territory

2017
PLoS Negl Trop Dis
PMCID: 5460889
PMID: 28542225
DOI: 10.1371/journal.pntd.0005503

[…] clinics, schools and community work-places because they viewed trachoma elimination as everyone’s business []. All resources featured the program mascot—Milpa (eye in Warlpiri language) the Trachoma Goanna and the slogans "Clean Faces, Strong Eyes" and “Wash your face whenever its dirty” to support new social norms for facial cleanliness. Clinic materials included clinical training tools and pati […]

call_split

Analysis of the spleen proteome of chickens infected with reticuloendotheliosis virus

2017
Arch Virol
PMCID: 5387025
PMID: 28097424
DOI: 10.1007/s00705-016-3180-5
call_split See protocol

[…] Spot identities were submitted to GORetriever (http://www.agbase.msstate.edu/) to obtain the GO annotations. If no annotation was returned, GOanna was used to retrieve GO annotations assigned based on sequence similarity. The resulting annotations were summarized based on the GOA and whole proteome GOSlim set using GOSlimViewer []. […]

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