Goanna pipeline

Goanna specifications

Information


Unique identifier OMICS_22590
Name Goanna
Interface Web user interface
Restrictions to use None
Input data Some protein accessions and a list of either nucleotide or protein sequences.
Input format TSV+FASTA
Output format HTML,TSV
Computer skills Basic
Stability Stable
Maintained Yes

Additional information


http://www.agbase.msstate.edu/help/annahelp.htm http://www.agbase.msstate.edu/Education/NABDAWorkshop/tutorial_4/tutorial_4.htm

Goanna IN pipelines

 (2)
2015
PMCID: 4620937
PMID: 26526746
DOI: 10.4137/BBI.S30525

[…] for an input gene list and goslimviewer summarizes go annotations at a higher level. for bovine gene products that lack go, functional domains with go annotations in other species are identified by goanna by a basic local alignment search tool (blast) search, enabling the transfer of go annotations from other species to bovine gene products, when appropriate. recognizing that not all gene […]

2015
PMCID: 4620937
PMID: 26526746
DOI: 10.4137/BBI.S30525

[…] possible to retrieve the available functional go information using the agbase83 tool goretriever and summarize the go using goslimviewer. for a set of bovine genes that lack functional annotation, goanna at agbase can add gos based on sequence homology. pathways resources such as reactome,94,95 kegg,89 unipathways,92 innatedb,97 tfdb,99 and hpidb103 can each add additional bits of relevant […]

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