GoArrays statistics

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GoArrays specifications

Information


Unique identifier OMICS_23816
Name GoArrays
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data Some sequences.
Output data The designed oligos.
Operating system Unix/Linux
Programming languages C++, Java
Computer skills Advanced
Stability Stable
Requirements
JRE, NCBI BLAST
Maintained Yes

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Versioning


No version available

Maintainers


  • person_outline Pierre Peyret
  • person_outline Sebastien Rimour

Additional information


http://g2im.u-clermont1.fr/serimour/goarrays/index.html

Publication for GoArrays

GoArrays citations

 (3)
library_books

Seeds for effective oligonucleotide design

2011
BMC Genomics
PMCID: 3128067
PMID: 21627845
DOI: 10.1186/1471-2164-12-280

[…] roarrays.Many software programs have been written to construct good DNA oligonucleotides, such as ProbeSelect [], PROBESEL [], ProMide [], OligoArray [,], ArrayOligoSelector [], OligoWiz [], ROSO [], GoArrays [], and ProDesign []. One crucial issue in designing good oligonucleotides is to minimize the chance of cross-hybridization. Unsuitable regions are filtered out before checking for cross-hybr […]

library_books

An evaluation of custom microarray applications: the oligonucleotide design challenge

2009
Nucleic Acids Res
PMCID: 2665234
PMID: 19208645
DOI: 10.1093/nar/gkp053

[…] e Entrez Gene identifier. We selected half of the 20 design programs we evaluated previously for the oligonucleotide design. We first discarded nine of them because they did not fulfil all our needs. GoArrays has been developed to design a pair of short oligonucleotides linked together with a short spacer. HPD finds common or discriminant oligonucleotides of conserved genes. Oligodb is dedicated t […]

library_books

The unique probe selector: a comprehensive web service for probe design and oligonucleotide arrays

2008
BMC Bioinformatics
PMCID: 2259409
PMID: 18315861
DOI: 10.1186/1471-2105-9-S1-S8

[…] pairs in the reaction.Several tools are available for probe design. Most of these are performed in command mode, and only few provide a Graphic User Interface (GUI). For example, OligoArray 2.1 [,], GoArrays [], OligoPicker [], ArrayOligoSelector [] and Picky [] are stand-alone application tools run in command mode and provide unique probes for input sequences under the constrains of GC%, Tm, abs […]

Citations

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GoArrays institution(s)
LIMOS UMR CNRS 6158, Blaise Pascal University, Clermont-Ferrand II, Aubiere, France; LBP UMR CNRS 6023, Blaise Pascal University, Institut Universitaire de Technologie, Clermont-Ferrand I University, Aubiere, France
GoArrays funding source(s)
Supported by a grant from the CNRS ‘puces à ADN’; and by a grant from ‘Ministère de l’éducation, de la recherche et de la technologie’.

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