GoArrays statistics

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Citations per year

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Popular tool citations

chevron_left Oligonucleotide design chevron_right
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GoArrays specifications

Information


Unique identifier OMICS_23816
Name GoArrays
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data Some sequences.
Output data The designed oligos.
Operating system Unix/Linux
Programming languages C++, Java
Computer skills Advanced
Stability Stable
Requirements
JRE, NCBI BLAST
Maintained Yes

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Versioning


No version available

Maintainers


  • person_outline Pierre Peyret
  • person_outline Sebastien Rimour

Additional information


http://g2im.u-clermont1.fr/serimour/goarrays/index.html

Publication for GoArrays

GoArrays citations

 (2)
library_books

FibroChip, a Functional DNA Microarray to Monitor Cellulolytic and Hemicellulolytic Activities of Rumen Microbiota

2018
Front Microbiol
PMCID: 5816793
PMID: 29487591
DOI: 10.3389/fmicb.2018.00215

[…] we selected between 2 and 20 25-mer probes per gene, distributed along the target (supplementary table ). to enhance the sensitivity of the microarray while keeping specificity, we also used the goarrays strategy (rrid:scr_005785; ). to this end, selected probes were concatenated to produce 54-mer probes, constituted of two 25-mer probes linked by a spacer of 4 nt (supplementary table ). […]

library_books

Seeds for effective oligonucleotide design

2011
BMC Genomics
PMCID: 3128067
PMID: 21627845
DOI: 10.1186/1471-2164-12-280

[…] many software programs have been written to construct good dna oligonucleotides, such as probeselect [], probesel [], promide [], oligoarray [,], arrayoligoselector [], oligowiz [], roso [], goarrays [], and prodesign []. one crucial issue in designing good oligonucleotides is to minimize the chance of cross-hybridization. unsuitable regions are filtered out before checking […]


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GoArrays institution(s)
LIMOS UMR CNRS 6158, Blaise Pascal University, Clermont-Ferrand II, Aubiere, France; LBP UMR CNRS 6023, Blaise Pascal University, Institut Universitaire de Technologie, Clermont-Ferrand I University, Aubiere, France
GoArrays funding source(s)
Supported by a grant from the CNRS ‘puces à ADN’; and by a grant from ‘Ministère de l’éducation, de la recherche et de la technologie’.

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