GOAT

[…] fraction of under-group in subset divided by fraction of under-group in full set., for discovering significantly enriched gene ontology (go) terms in the central gene subsets, we use the web-based gene ontology analysis tool gorilla [–], which is a tool for identifying enriched go terms related to process, function and component, organizing the results in hierarchies. as we are interested […]

[…] provided by the output of snpeff for the wild type (36,959 transcripts), st77 (38,691 transcripts), st111 (34,142 transcripts), and 764 (43,426 transcripts) lines were loaded into the agrigo online gene ontology analysis tool and subjected to a single enrichment analysis with multiple corrections to deduce the functional roles of polymorphic genes. out of the total glycine maxv2.1 background […]

[…] : table s4). to gain a better understanding of the underlying biological functions and pathways associated with the adult salivary gland gene signature, we utilized cluego [], which is a functional gene ontology analysis tool that integrates several gene-set enrichment databases, including the kyoto encyclopedia of genes and genomes (kegg), reactome pathway database annotations, and the go […]

[…] which is a public knowledgebase dedicated to the management, analysis and integration of virus–host interactions (; ). proteins annotated to be involved in innate immunity were screened using the gene ontology analysis tool from innatedb database (; ; )., interaction networks of the proteins were generated through the use of string database (version 10) () and cytoscape software (version […]

[…] that other proteins may be equally if not more important uric acid transporters than urat1, and because a number of other urat1 substrates have been identified, we used, as a first step, the gene ontology analysis tool amigo (http://amigo1.geneontology.org/; accessed february 11th, 2015) to quantify the enrichment of general functional annotations among the differentially expressed […]