GOAT

[…] e : Table S4). To gain a better understanding of the underlying biological functions and pathways associated with the adult salivary gland gene signature, we utilized ClueGO [], which is a functional gene ontology analysis tool that integrates several gene-set enrichment databases, including the Kyoto Encyclopedia of Genes and Genomes (KEGG), REACTOME pathway database annotations, and the GO Conso […]

[…] ndicated that other proteins may be equally if not more important uric acid transporters than URAT1, and because a number of other URAT1 substrates have been identified, we used, as a first step, the gene ontology analysis tool AmiGO (http://amigo1.geneontology.org/; accessed February 11th, 2015) to quantify the enrichment of general functional annotations among the differentially expressed genes. […]

[…] To study the response of cells to stress induced by inhibition of the mitochondrial ETC complex III, we monitored by mRNA-seq the transcriptome changes following myxothiazol treatment. We used the gene ontology analysis tool DAVID to assess the enrichment of transcripts corresponding to functional groups within the list of differentially expressed genes relative to their representation within t […]

[…] vation, in addition to studying protein families enriched within the different organism subdivisions.We use the conservation profiles to hierarchically partition the set of proteins, and then apply a gene ontology analysis tool, GOrilla (Eden et al. ). This enables the elucidation of relations between sequence conservation, function, and the consistency of conservation profiles with the tree of li […]

[…] ntial expression of these genes was confirmed. In order to match biological functions to the list of differentially regulated genes, we performed a gene ontology (GO) term enrichment analysis using a gene ontology analysis tool (GOAT) , . A list of GO term enrichments for genes differentially expressed in the CbfA mutant is deposited in . Our analysis suggests that CbfA positively regulates biolog […]

[…] he basis of a 1-tailed test at P ≤ 0.05.To determine what biological processes were associated with the identified Peromycsus ESTs, we analyzed the mouse and rat homologous gene lists using an online gene ontology analysis tool, FatiGO []. We assigned gene ontologies using the fourth level of increasing specificity. […]