GObar specifications

Information


Unique identifier OMICS_18898
Name GObar
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Taxon


  • Invertebrates
    • Drosophila melanogaster
  • Plants and Fungi
    • Saccharomyces cerevisiae
  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus

Maintainers


This tool is not available anymore.

Publication for GObar

GObar citations

 (2)
library_books

BACA: bubble chArt to compare annotations

2015
BMC Bioinformatics
PMCID: 4377007
PMID: 25652236
DOI: 10.1186/s12859-015-0477-4

[…] erstand when comparing multiple experimental conditions (e.g. treatments, disease states, etc.). Several tools are available to visually compare the results from multiple enrichment analysis, such as GOBar [], Go-Mapper [], high-throughput GoMiner [], the GOEAST [] and REViGO []. These are specific tools that focus more on the integration than the visualization aspect.Here we provide BACA, a novel […]

library_books

Mapping biomedical concepts onto the human genome by mining literature on chromosomal aberrations

2007
Nucleic Acids Res
PMCID: 1885641
PMID: 17403693
DOI: 10.1093/nar/gkm054

[…] ing the hypergeometric distribution.Other tools use the hypergeometrical distribution or equivalent Fisher's exact test for finding overrepresented concepts from gene ontology, including Fatigo (22), GObar (23), GoMiner (24), GOToolBox (25), GeneMerge (26), GOTree Machine (27), OntologyTraverser (28), GOCluster (29) and GOHyperGAll in R BioConductor (30).In BlastSets, Barriot et al. use the hyperg […]

GObar institution(s)
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA
GObar funding source(s)
Supported by the Cancer Center of CSHL.

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