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GobyWeb

A web application to aid with the analysis of high-throughput sequencing data. In the back-end, it uses the Goby framework, BWA, STAR, Last, GSNAP, Samtools, VCF-tools, along with a cluster of servers to provide rapid alignment and efficient analyses. GobyWeb makes it possible to analyze hundreds of samples in consistent ways without having to use command line tools. GobyWeb provides tools that streamline frequent data analyses for RNA-seq, Methyl-seq, RRBS, or DNA-seq datasets and to enable teams of investigators to share reads and results of analyses. GobyWeb can be extended for new analyses by developing plugins.

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GobyWeb classification

GobyWeb specifications

Interface:
Web user interface
Computer skills:
Basic
Maintained:
Yes
Restrictions to use:
Academic or non-commercial use
Stability:
Stable

GobyWeb distribution

GobyWeb support

Maintainer

  • Fabien Campagne <>

Credits

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Publications

Institution(s)

The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, The Weill Cornell Medical College, New York, NY, USA; Department of Physiology and Biophysics, The Weill Cornell Medical College, New York, NY, USA

Funding source(s)

This work was supported by grant UL1 RR024996 (NIH/NCRR) of the Clinical and Translation Science Center at Weill Cornell Medical College, by grant LLS 6304-11 from the Lymphoma and Leukemia Society Translational Research Program, and by R01 MH086883 (NIH/NIMH). Support was also provided by the Tri-Institutional Training Program in Computational Biology and Medicine.

Link to literature

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