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Associated diseases

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GOCat specifications

Information


Unique identifier OMICS_13667
Name GOCat
Alternative name Gene Ontology Categorizer
Interface Web user interface
Restrictions to use None
Input data A free text
Computer skills Basic
Version 1.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline Julien Gobeill <>

Publication for Gene Ontology Categorizer

GOCat in publications

 (14)
PMCID: 5388904
PMID: 28413238
DOI: 10.1021/acs.organomet.7b00077

[…] the european research council. d.-a.r. thanks the university of east anglia for a ph.d. studentship and a katritzky scholarship. m.b. is an erc advanced investigator award holder (grant no. 338944 -gocat).] […]

PMCID: 5018193
PMID: 27613112
DOI: 10.1186/s13326-016-0096-7

[…] and similarity to calculate the score of go term t appearing in zone z. they report average precision and recall of 0.34 for the terms at rank 1 on the biocreative i corpus. a more recent system, gocat [], combines semantic similarity and a machine learning based k-nn algorithm to return the most similar k go concepts in some text. on the biocreative i corpus, gocat reports 0.56 precision […]

PMCID: 5113781
PMID: 27592697
DOI: 10.1002/anie.201607522

[…] (other than missing files) should be addressed to the authors., this work was supported by the european research council. m.b. is an erc advanced investigator award holder (grant no. 338944‐gocat). we are grateful to the epsrc national crystallography service, southampton, uk, for collecting the crystallographic data […]

PMCID: 4836671
PMID: 27092778
DOI: 10.1371/journal.pone.0153831

[…] up-regulated in β°-thalassemia/hb e patients belonged to a number of cellular processed including oxidative phosphorylation and energy metabolism (table b in ). ontological analysis using the gocat software [] showed that most of the differentially expressed proteins were involved in cellular processes (30%), regulation (17%) and metabolic processes (8%) as shown in . functional […]

PMCID: 4646827
PMID: 26601313
DOI: 10.1126/sciadv.1500761

[…] after 1 week., this work was supported by the european research council (erc), the leverhulme trust, and johnson matthey plc. m.b. is an erc advanced investigator award holder (grant no. 338944-gocat). d.-a.r. thanks the university of east anglia for a studentship. author contributions: m.b. conceived and designed the research; d.-a.r., j.f.-c., and j.m. performed the experiments; j.a.w. […]


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GOCat institution(s)
BiTeM group, University of Applied Sciences, HEG – Library and Information Sciences, Geneva, Switzerland; Division of Medical Information Sciences, University and Hospitals of Geneva, Geneva, Switzerland; SIBtex group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland
GOCat funding source(s)
This work was funded by the Swiss National Fund for Scientific Research [BiND project 3252B0-105755] and by the FP7 program [Khresmoi project FP7–257528].

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