goCluster statistics

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Citations per year

Number of citations per year for the bioinformatics software tool goCluster

Tool usage distribution map

This map represents all the scientific publications referring to goCluster per scientific context
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Associated diseases


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goCluster specifications


Unique identifier OMICS_15648
Name goCluster
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.6.0
Stability Stable
Maintained Yes




No version available



  • person_outline Gunnar Wrobel

Publication for goCluster

goCluster citations


Global transcriptional analysis suggests Lasiodiplodia theobromae pathogenicity factors involved in modulation of grapevine defensive response

BMC Genomics
PMCID: 4981995
PMID: 27514986
DOI: 10.1186/s12864-016-2952-3
call_split See protocol

[…] analysis (Fisher’s exact test, FDR < 0.05) using Blast2GO software (version 3.0, GO-DB version 2014–09, []). The GOplot package (version 1.0.1, []) in the R environment was used to generate the graph GOcluster and GOcircle in order to obtain a more detailed view of co-regulated genes in relationship with functional enrichment. […]


Mapping biomedical concepts onto the human genome by mining literature on chromosomal aberrations

Nucleic Acids Res
PMCID: 1885641
PMID: 17403693
DOI: 10.1093/nar/gkm054

[…] her's exact test for finding overrepresented concepts from gene ontology, including Fatigo (22), GObar (23), GoMiner (24), GOToolBox (25), GeneMerge (26), GOTree Machine (27), OntologyTraverser (28), GOCluster (29) and GOHyperGAll in R BioConductor (30).In BlastSets, Barriot et al. use the hypergeometric distribution to calculate the probability of having at least the observed number of elements i […]


FACT – a framework for the functional interpretation of high throughput experiments

BMC Bioinformatics
PMCID: 1189078
PMID: 15985174
DOI: 10.1186/1471-2105-6-161

[…] ombined algorithm, which calculates a K-Means similarity matrix based on the experimental values and reports on significant terms with the Fisher's exact test within the identified groups afterwards (goCluster, G. Wrobel, available at ). Another analysis module dedicated to the comparison of genomic and expression data runs pairs of two-sided T-Tests on the groups of over- and under-expressed gene […]

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goCluster institution(s)
Biozentrum and Swiss Institute of Bioinformatics, Basel, Switzerland
goCluster funding source(s)
This project is, in part, supported by the Swiss Institute of Bioinformatics.

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