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godef

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Finds gene ontology (GO) terms by definition and returns matching terms. The input for godef is read from the installed GO database. The ontology term output can be written to screen, to file, or passed to another program. A wide range of standard ontology term formats may be specified for input and output.

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godef classification

godef specifications

Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 3.0
Stability:
Stable
Maintained:
Yes
Interface:
Command line interface
Output data:
An ontology metadata.
Programming languages:
C
Computer skills:
Advanced
Source code URL:
ftp://emboss.open-bio.org/pub/EMBOSS/emboss-latest.tar.gz

godef distribution

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godef support

Maintainer

  • Peter Rice <>

Credits

Institution(s)

European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK

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