GOdMD statistics
Citations per year
Tool usage distribution map
Associated diseases
Popular tool citations
Related tools
GOdMD specifications
Information
| Unique identifier | OMICS_13990 |
|---|---|
| Name | GOdMD |
| Interface | Web user interface |
| Restrictions to use | None |
| Input data | Protein structures |
| Input format | PDB |
| Computer skills | Basic |
| Stability | Stable |
| Maintained | Yes |
Maintainer
- person_outline Modesto Orozco
Publication for GOdMD
GOdMD citations
(2)Dancing through Life: Molecular Dynamics Simulations and Network Centric Modeling of Allosteric Mechanisms in Hsp70 and Hsp110 Chaperone Proteins
[…] n subdomains IA and IIA of the NBD. This may be followed by SBD-β docking with NBD, and subsequently SBD-α binds NBD []. By using discrete molecular dynamics (dMD) simulations [,] in the framework of GOdMD approach [,] we probed conformational transitions between closed and open forms of DnaK to determine molecular catalysts of allosteric changes. In the basic dMD formalism particles move in the b […]
Path Similarity Analysis: A Method for Quantifying Macromolecular Pathways
[…] TMD differs from DIMS in that explicit forces are introduced into the system Hamiltonian whereas DIMS effectively introduces an entropic force.Maxwell-Demon discrete Molecular Dynamics [] (MDdMD) and GOdMD [] are similar in spirit and are the only two methods based on a physical dynamical model among the server-based transition path generation methods. Both are based on discrete MD combined with s […]
GOdMD reviews
Be the first to review GOdMD