GoFDR specifications

Information


Unique identifier OMICS_27084
Name GoFDR
Alternative name Gene Ontology Functionnaly Discriminating Residues
Interface Web user interface
Restrictions to use None
Input data A query sequence-based multiple sequence alignment (MSA) produced by PSI-BLAST.
Computer skills Basic
Maintained No

Maintainer


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Publication for Gene Ontology Functionnaly Discriminating Residues

GoFDR citation

library_books

An efficient method for protein function annotation based on multilayer protein networks

2016
Hum Genomics
PMCID: 5039885
PMID: 27678214
DOI: 10.1186/s40246-016-0087-x

[…] gy (GO) terms associated with domains of direct neighbors in the PON. Recently, some new algorithms are proposed to predict protein function from PPI networks. Gong et al. [] developed a method named GoFDR for predicting GO-based protein functions. The input for GoFDR is simply a query sequence-based multiple sequence alignment (MSA) produced by PSI-BLAST (Position-Specific Iterated BLAST). Kumar […]

GoFDR institution(s)
State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, Department of Biostatistics and Computational Biology, School of Life Science, Fudan University, Shanghai, China; Children’s Hospital of Fudan University, Shanghai, China
GoFDR funding source(s)
Supported by the National Natural Science Foundation of China [31471245, 91231116, 31071113, 30971643]; the Specialized Research Fund for the Doctoral Program of Higher Education of China [20120071110018]; the Innovation Program of Shanghai Municipal Education Commission [13ZZ006]; and the Shuguang Program of Shanghai Municipal Education Commission [13SG05].

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