GOFFA protocols

View GOFFA computational protocol

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GOFFA specifications

Information


Unique identifier OMICS_18790
Name GOFFA
Alternative name Gene Ontology For Functional Analysis
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Database management system Oracle
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainers


  • person_outline Dr. Weida Tong <>
  • person_outline Hong Fang <>
  • person_outline Hongmei Sun <>
  • person_outline Tao Chen <>
  • person_outline Roger Perkins <>

Publication for Gene Ontology For Functional Analysis

GOFFA in pipeline

2011
PMCID: 3140411
PMID: 21792293
DOI: 10.4137/GRSB.S7457

[…] (degs) were identified using a t-test with a combination of cut off p-value (p < 0.05) and fold change (fc > 2). the array-track gene ontology (go) tool gene ontology for function analysis (goffa) was subsequently applied to the degs for biological interpretation., the statistical significance of a go term was determined using fisher’s exact test. furthermore, the gopath and treeprune […]


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GOFFA in publications

 (17)
PMCID: 5070002
PMID: 27756279
DOI: 10.1186/s12889-016-3761-y

[…] immediate measures are taken. however, the prevalence of smear positive pulmonary tuberculosis among tuberculosis suspected prison inmates of north gondar was lower than what was reported from gamo goffa zone (19.4 %), southern ethiopia. the prevalence of smear positive pulmonary tuberculosis in prisons was reported as 8-fold higher than the prevalence in the general population in southern […]

PMCID: 4413048
PMID: 25511658
DOI: 10.1002/biot.201400196

[…] an isolated out-group, while all j. curcas accessions from different regions formed two main clusters. one cluster (green) with 99% bootstrap support contained three populations of wolita, shoa fok, goffa, and kemise_d, all originating from ethiopia. the second cluster contained three subclusters: one (violet) with the populations from kenya (busia and siaya), china and ethiopia (shoa-rabit), […]

PMCID: 4287195
PMID: 25280967
DOI: 10.1186/1471-2431-14-250

[…] first hospital to introduce antiretroviral treatment in snnpr in 2003—at a time when there were only few such centres in ethiopia. the hospital serves a population of over 1.5 million in the gamo goffa zone of snnpr. we established the hiv cohort database in 2003 and maintained it through this date. since this is the longest-followed cohort in ethiopia and resource constraint did not allow us […]

PMCID: 3225464
PMID: 22140322
DOI: 10.2147/IJWH.S23124

[…] mother-to-child-transmission (pmtct) sites located around the country. of these, 63 (15.6%) are found in the southern nations, nationalities and peoples’ region and four are located in the gamo goffa zone. it is estimated that 800,000 infants were infected with hiv via mother-to-child transmission in 2001, almost 90% of them in sub-saharan africa. the increasing number of women living […]

PMCID: 3145629
PMID: 21829439
DOI: 10.1371/journal.pone.0021667

[…] bp from the center of the es. all refseq genes associated with an es were joined into a single list which was used for gene ontology categorization. gene ontology categorization was done with goffa ., total rna was isolated with the qiagen's rneasy isolation kit and 10 µg of total rna was used for subsequent hybridization experiments according to the manufacturer's recommendations […]


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GOFFA institution(s)
Z-tech Corporation, Jefferson, AR, USA; National Center for Toxicological Research, Food and Drug Administration, Jefferson, AR, USA

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