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GoGrapher

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Contains common routines for graph operation and analysis, for instance, creation of graphs, finding shortest paths, extracting minimum spanning trees, and graph topology analysis. GOGrapher is a reusable library that contains four different types of graphs based on whether each graph. This resource is also capable of using ontology definition and annotation data files from the Gene Ontology Consortium. It also reduces the redundancy and complexity that come from recreating the same functionality involved in creating Gene Ontology (GO) graphs.

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GoGrapher classification

GoGrapher specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
Python
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux, Windows
License:
GNU General Public License version 3.0
Stability:
Stable

GoGrapher distribution

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GoGrapher support

Maintainers

  • Xinghua Lu <>
  • Brian Muller <>
  • Adam Richards <>
  • Bo Jin <>

Credits

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Publications

Institution(s)

Department of Biostatistics, Bioinformatics and Epidemiology, Medical University of South Carolina, Charleston, SC, USA

Funding source(s)

Partially supported by the following NIH grants: R01LM009153-01A1, T15LM07438, and 2P20RR017677, and by a graduate fellowship of the College of Graduate Studies, Medical University of South Carolina.

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