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GoMapMan specifications

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Unique identifier OMICS_02280
Name GoMapMan
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for GoMapMan

GoMapMan citations

 (10)
library_books

Target proteins reprogrammed by As and As + Si treatments in Solanum lycopersicum L. fruit

2017
BMC Plant Biol
PMCID: 5696772
PMID: 29157202
DOI: 10.1186/s12870-017-1168-2

[…] generated by r v3.3.1 (www.r-project.org)., in modern plant biology, the most widely used ontologies are the gene ontology (go) and gene ontology mapman []., mapman ontology was performed using the gomapman tool [] based on itag release 2.3 (2011-04-26) of the tomato genome sequence (solgenomics.net/organism/solanum_lycopersicum/genome). mapman 3.6.0rc1 software […]

library_books

Chloroplast Redox Status Modulates Genome Wide Plant Responses during the Non host Interaction of Tobacco with the Hemibiotrophic Bacterium Xanthomonas campestris pv. vesicatoria

2017
Front Plant Sci
PMCID: 5495832
PMID: 28725231
DOI: 10.3389/fpls.2017.01158

[…] probes corresponding to the same unigene, values were averaged. probe-to-unigene assignments were carried out using the corresponding file (microarray_nta_agilent_4x44k_genes.txt) available at the gomapman website resource (). an empirical bayes method with a moderated t-statistic was employed for the determination of the genes with statistically significant changes, whereas the benjamini […]

library_books

System Level and Granger Network Analysis of Integrated Proteomic and Metabolomic Dynamics Identifies Key Points of Grape Berry Development at the Interface of Primary and Secondary Metabolism

2017
Front Plant Sci
PMCID: 5491621
PMID: 28713396
DOI: 10.3389/fpls.2017.01066

[…] and theobroma cacao (from plaza with 44,404 protein sequences) with the blastp function in ncbi (v 2.2.31, ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/latest/). a cacao mapping file from gomapman (“tca_phytozome9.1_transcript_2015-01-09_mapping.xlsx,” http://www.gomapman.org/export/current/mapman) was applied for the functional analysis., the obtained metabolite data were normalized […]

library_books

Ethylene induced transcriptional and hormonal responses at the onset of sugarcane ripening

2017
Sci Rep
PMCID: 5339719
PMID: 28266527
DOI: 10.1038/srep43364

[…] initiative locus identifier (agi), with 173 monocot-specific sequences (no hits). hence, we restricted our analysis to conserved genes between monocots and eudicots. we utilized the mapman ontology (gomapman) released in the mercator output to calculate the percentage of de sas within each category. putative genes encoding proteins involved in or related to hormone metabolism, stress, rna, […]

library_books

Regulation of BZR1 in fruit ripening revealed by iTRAQ proteomics analysis

2016
Sci Rep
PMCID: 5041101
PMID: 27680870
DOI: 10.1038/srep33635

[…] analysis) coupled with available background data of tomato. a freely available program called permutmatrix was used to carry out the clustering analysis., the tomato mapman ontologies (http://www.gomapman.org/export/current/mapman/sly_sl2.40_itag2.3_2015-01-09_mapping.txt.tgz) were retrieved from the gomapman web resource and imported in the mapman tool version 3.6.0. then, the tomato […]

library_books

Temperature desynchronizes sugar and organic acid metabolism in ripening grapevine fruits and remodels their transcriptome

2016
BMC Plant Biol
PMCID: 4955140
PMID: 27439426
DOI: 10.1186/s12870-016-0850-0

[…] of functional categories was done on all heat modulated transcripts in all stages and conditions, using the pageman software [] implemented in mapman [], the mapping file was derived from http://www.gomapman.org/., subsequently all specifically modulated transcripts were extracted and analyzed using the fatigo analysis tool [], to compare the genes list with non-redundant transcripts […]


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GoMapMan institution(s)
Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia; Department of Knowledge Technologies, JoŽef Stefan Institute, Ljubljana, Slovenia; Department of Biology, Institute for Biology I, RWTH Aachen University, D- Aachen, Germany; IBG-2: Plant Sciences, Institute for Bio- and Geosciences, Forschungszentrum Jülich, Jülich, Germany

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