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GONOME specifications

Information


Unique identifier OMICS_25371
Name GONOME
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A set of genomic positions and a genome annotated with the locations of genes.
Output data A graph giving the E-values of the most over-represented GO terms, and tables providing E-values.
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++, Perl
License MIT License
Computer skills Advanced
Maintained Yes

Versioning


No version available

Maintainers


  • person_outline Timothy L. Bailey
  • person_outline John Mattick
  • person_outline Stefan Stanley

Publication for GONOME

GONOME citations

 (3)
library_books

Plasmonically Enhanced Reflectance of Heat Radiation from Low Bandgap Semiconductor Microinclusions

2017
Sci Rep
PMCID: 5515976
PMID: 28720771
DOI: 10.1038/s41598-017-05630-4

[…] use infrared reflectance of up to 90% for LPC paints with microscale inclusions of single-crystal hexagonal Boron Nitride platelets (h-BN) albeit at an unusually high h-BN volume fraction of f = 0.5. Gonome et al. have also demonstrated up to 90% near-infrared broadband reflectances for cool coatings with submicron copper-oxide (CuO) particles at low volume fractions ranging from f = 0.02 to 0.05. […]

library_books

Signatures of Environmental Genetic Adaptation Pinpoint Pathogens as the Main Selective Pressure through Human Evolution

2011
PLoS Genet
PMCID: 3207877
PMID: 22072984
DOI: 10.1371/journal.pgen.1002355

[…] Gene ontology (GO) analyses were performed with GONOME , an algorithm that identifies GO terms over-represented in a set of genomic position (in our case SNPs) compared to that expected in random positions. GONOME avoids biases toward GO terms link […]

library_books

Distinct Origin of the Y and Saint Genome in Elymus Species: Evidence from the Analysis of a Large Sample of Saint Genome Species Using Two Nuclear Genes

2011
PLoS One
PMCID: 3203181
PMID: 22046383
DOI: 10.1371/journal.pone.0026853

[…] g grouped with other St-genome sequences from tetraploid StY species. Furthermore, in the EF-G tree, the presumed St-genome copy of E. longearistatus (StY) proved to be different from other larger St-gonome clade sequences and formed another well-supported clade (96% BS) with two P. libanotica individuals and P. tauri. This discrepancy within the sequence data between the St copy of E. longearista […]

Citations

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GONOME institution(s)
Institute for Molecular Bioscience, University of Queensland, Brisbane, QLD, Australia

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