GORetriever pipeline

GORetriever specifications

Information


Unique identifier OMICS_22589
Name GORetriever
Interface Web user interface
Restrictions to use None
Input data Some protein accessions.
Input format TXT
Computer skills Basic
Stability Stable
Maintained Yes

Additional information


http://www.agbase.msstate.edu/help/retrieverhelp.htm http://www.agbase.msstate.edu/Education/NABDAWorkshop/tutorial_3/tutorial_3.htm

GORetriever citations

 (4)
2018
PMCID: 5879616

[…] resource proteins database (release tair10), the maize b73 refgen_v3 database, and the rice genome annotation project (rgap) release 7. gene ontology (go) analysis was performed using agbase goretriever and goslimviewer [46], and pathways were enriched using the ncbi flink (https://www.ncbi.nlm.nih.gov/structure/flink/flink.cgi) and kegg (kyoto encyclopedia of genes and genomes) […]

2018
PMCID: 5936019

[…] refgen_v3 database, and the rice genome annotation project (rgap) release 7. all target genes and differentially expressed target genes were analyzed. gene ontology (go) was analyzed using agbase goretriever and goslimviewer [58], and enriched pathways were identified using ncbi flink (https://www.ncbi.nlm.nih.gov/structure/flink/flink.cgi) based on kegg (kyoto encyclopedia of genes […]

2015
PMCID: 4620937

[…] out functional analysis of agricultural plant and animal gene products. agbase provides go for bovine gene products and also has tools for functional genomics data analysis. agbase tools like goretriever fetch available go for an input gene list and goslimviewer summarizes go annotations at a higher level. for bovine gene products that lack go, functional domains with go annotations […]

2015
PMCID: 4620937

[…] rapid analysis of functional genomics data for biological interpretation. given a list of bovine genes, it is possible to retrieve the available functional go information using the agbase83 tool goretriever and summarize the go using goslimviewer. for a set of bovine genes that lack functional annotation, goanna at agbase can add gos based on sequence homology. pathways resources […]

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