GOrilla protocols

GOrilla specifications

Information


Unique identifier OMICS_02282
Name GOrilla
Alternative name Gene Ontology enRIchment anaLysis and visuaLizAtion tool
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for Gene Ontology enRIchment anaLysis and visuaLizAtion tool

GOrilla IN pipelines

 (8)
2017
PMCID: 5292663
PMID: 28174685
DOI: 10.1002/2211-5463.12176

[…] with default setting was utilized to identify differentially expressed gene transcripts (cit as per below). gene ontology (go) clustering for biological processes was performed using david 6.7 15. gorilla was utilized to visualize enriched go terms for biological processes with a p‐value threshold of < 10−9 16., in an effort to examine the effects of arthrocen on inflammatory cytokines […]

2017
PMCID: 5470682
PMID: 28614372
DOI: 10.1371/journal.pone.0178966

[…] in s2 and s3 tables) [25]. 19,076 transcripts were characterized; 18,543 were identified as genes and 15,448 were associated with a gene ontology (go) term using the gene ontology analysis program gorilla [26]. as expected transcripts (e.g. il-13, il-25, il-22, inf-γ, tnf, and il-12) restricted to hematopoietic lineages were not detected. venn diagrams were prepared using the online tool […]

2017
PMCID: 5583673
PMID: 28831192
DOI: 10.1038/emi.2017.67

[…] were adjusted for multiple tests using false discovery rate.49 significant degs were identified with a fdr ≤0.05 and a log2(fold change) ≥1. gene ontology enrichment analysis was performed using gorilla50 by comparing the up/downregulated degs to a list of all expressed genes. significant go terms with fdr ≤0.05 were reported., although zikv can be detected in patients’ urine sample, […]

2017
PMCID: 5606996
PMID: 28931805
DOI: 10.1038/s41467-017-00353-6

[…] of the average for the transcript per million mapped (fpkm) reads between treated and untreated samples. finally, we performed go enrichment analyses on differentially expressed genes using gorilla software58., chromatin immunoprecipitation coupled with next generation sequencing (chip-seq) was carried out as described by ng et al.23. the chip-grade anti-histone h3 (acetyl k9) antibody […]

2015
PMCID: 4378937
PMID: 25822772
DOI: 10.1371/journal.pone.0120889

[…] using refseq annotations. hierarchical clustering was performed in r using heatmap.2 and differential expression analysis was performed using deseq[35]. gene ontology enrichment was performed using gorilla[36]., 5- gtg agt gat ggt tga ggt agt gtg gag ttt ttt ttt ttt -3 , 5- gtg agt gat ggt tga ggt agt gtg gag nnn nnn n -3 , 5- gtg agt gat ggt tga ggt agt gtg gag -3 , m2 medium […]

GOrilla institution(s)
Molecular Cell Biology Department, Weizmann Institute of Science, Rehovot, Israel

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