GORpipe specifications

Information


Unique identifier OMICS_15295
Name GORpipe
Software type Framework/Library
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Mac OS, Windows
Programming languages Shell (Bash)
Database management system MySQL
Computer skills Medium
Stability Stable
Maintained No

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Publication for GORpipe

GORpipe citation

library_books

Genome wide analysis yields new loci associating with aortic valve stenosis

2018
Nat Commun
PMCID: 5840367
PMID: 29511194
DOI: 10.1038/s41467-018-03252-6

[…] It uses public datasets compiled by Schmitt et al. in order to identify structural interactions of enhancers with genes (Hi-C compendium: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc = GSE87112)Gorpipe was employed to query the data and then imported into R for further analysis and plotting making use of base functions (R 3.4.1). The Hi-C data are binned into intervals of 40 kb which are ind […]

GORpipe institution(s)
WuXiNextCode Genomics, Sturlugata, Reykjavík, Iceland; deCODE Genetics, Sturlugata, Reykjavík, Iceland

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