GORpipe statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

Associated diseases

GORpipe specifications

Information


Unique identifier OMICS_15295
Name GORpipe
Software type Framework/Library
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Mac OS, Windows
Programming languages Shell (Bash)
Database management system MySQL
Computer skills Medium
Stability Stable
Maintained No

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Publication for GORpipe

GORpipe in publication

PMCID: 5840367
PMID: 29511194
DOI: 10.1038/s41467-018-03252-6

[…] uses public datasets compiled by schmitt et al. in order to identify structural interactions of enhancers with genes (hi-c compendium: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc = gse87112), gorpipe was employed to query the data and then imported into r for further analysis and plotting making use of base functions (r 3.4.1). the hi-c data are binned into intervals of 40 kb […]


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GORpipe institution(s)
WuXiNextCode Genomics, Sturlugata, Reykjavík, Iceland; deCODE Genetics, Sturlugata, Reykjavík, Iceland

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