GOSlimViewer pipeline

GOSlimViewer specifications

Information


Unique identifier OMICS_02270
Name GOSlimViewer
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for GOSlimViewer

GOSlimViewer IN pipelines

 (4)
2018
PMCID: 5879616
PMID: 29619087
DOI: 10.1186/s13068-018-1088-x

[…] proteins database (release tair10), the maize b73 refgen_v3 database, and the rice genome annotation project (rgap) release 7. gene ontology (go) analysis was performed using agbase goretriever and goslimviewer [46], and pathways were enriched using the ncbi flink (https://www.ncbi.nlm.nih.gov/structure/flink/flink.cgi) and kegg (kyoto encyclopedia of genes and genomes) databases. specific […]

2018
PMCID: 5936019
PMID: 29728055
DOI: 10.1186/s12870-018-1288-3

[…] and the rice genome annotation project (rgap) release 7. all target genes and differentially expressed target genes were analyzed. gene ontology (go) was analyzed using agbase goretriever and goslimviewer [58], and enriched pathways were identified using ncbi flink (https://www.ncbi.nlm.nih.gov/structure/flink/flink.cgi) based on kegg (kyoto encyclopedia of genes and genomes) databases. […]

2015
PMCID: 4620937
PMID: 26526746
DOI: 10.4137/BBI.S30525

[…] gene products. agbase provides go for bovine gene products and also has tools for functional genomics data analysis. agbase tools like goretriever fetch available go for an input gene list and goslimviewer summarizes go annotations at a higher level. for bovine gene products that lack go, functional domains with go annotations in other species are identified by goanna by a basic local […]

2015
PMCID: 4620937
PMID: 26526746
DOI: 10.4137/BBI.S30525

[…] data for biological interpretation. given a list of bovine genes, it is possible to retrieve the available functional go information using the agbase83 tool goretriever and summarize the go using goslimviewer. for a set of bovine genes that lack functional annotation, goanna at agbase can add gos based on sequence homology. pathways resources such as reactome,94,95 kegg,89 unipathways,92 […]

GOSlimViewer institution(s)
Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, MS, USA

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