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Gossamer

Assembles de novo genomes from fragments of DNA that specifically attacks the question of scalability. Gossamer is an extension of a prototype based on the succinct representation of de Bruijn assembly graphs as a bitmap or set of integers. It assembles base-space paired reads such as those from an Illumina sequencing platform. The tool operates in a series of explicit passes to give the user control of the assembly process.

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Gossamer forum

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Gossamer classification

Gossamer specifications

Software type:
Package/Module
Restrictions to use:
None
Computer skills:
Advanced
Maintained:
No
Interface:
Command line interface
Operating system:
Unix/Linux
Stability:
Stable

Gossamer distribution

versioning

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No versioning.

Gossamer support

Maintainer

This tool is not available anymore.

Credits

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Publications

Institution(s)

NICTA Victoria Research Laboratory, Department of Computing and Information Systems, The University of Melbourne, Parkville, Victoria, Australia

Funding source(s)

Supported by the Australian Government’s Department of Communications; Information Technology and the Arts; Australian Research Council through Backing Australia’s Ability and ICT Centre of Excellence programs

Link to literature

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