GOSSIP pipeline

GOSSIP specifications

Information


Unique identifier OMICS_19193
Name GOSSIP
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Windows
Computer skills Advanced
Stability Stable
Registration required Yes

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Publication for GOSSIP

GOSSIP IN pipelines

 (2)
2016
PMCID: 4855978
PMID: 27142227
DOI: 10.1186/s12864-016-2639-9

[…] one of the analyzed condition and with at least six counts among all conditions. in this analysis, blast2go [77] was used to compute enriched go terms applying fisher’s exact test as implemented in gossip [76, 78]. go terms with 0.05 fdr and q-value ≤ 0.05 were considered as significantly enriched in each comparison., rna-seq were deposited in the ncbi biosample database […]

2007
PMCID: 2246132
PMID: 18154659
DOI: 10.1186/1471-2164-8-475

[…] level 2). an example of this output is shown for all libraries in figure 1, with the majority of clones having either catalytic or binding activities. although the libraries were normalised, gossip [24] was used to perform statistical analyses using pair-wise comparisons of each library with the control library to identify any potential enrichment for particular genes or gene functions. […]

GOSSIP institution(s)
Institute for Theoretical Biology, Humboldt University Berlin, Germany; Pathologisches Institut, Ruprecht-Karls-Universitat Heidelberg, Germany; MicroDiscovery GmbH , Berlin, Germany
GOSSIP funding source(s)
Supported by the Deutsche Forschungsgemeinschaft (SFB 618) and the BMBF grant number 01GR0444.

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