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GOsummaries specifications


Unique identifier OMICS_12481
Name GOsummaries
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 2.16.1
Stability Stable
limma, plyr, grid, Rcpp, ggplot2, R(>=2.15), reshape2, gtable, vegan, gProfileR
Maintained Yes




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  • person_outline Raivo Kolde

Publication for GOsummaries

GOsummaries citation


Exhaustive data mining comparison of the effects of low doses of ionizing radiation, formaldehyde and dioxins

BMC Genomics
PMCID: 4303946
PMID: 25563934
DOI: 10.1186/1471-2164-15-S12-S5

[…] s was carried out in the R package VennDiagram []. Statistical significance and visualization of gene ontologies for different influences were presented in the form of a "word cloud" in the R package GOsummaries [].In addition to the analysis of gene ontologies, the comparisons by KEGG and caBIO were made to compare the functional characteristics of genes that get activated at different exposures. […]

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GOsummaries institution(s)
Institute of Computer Science, University of Tartu, Tartu, Estonia; Quretec, Tartu, Estonia; Center for Computational and Integrative Biology, Massachusetts General Hospital, Boston, MA, USA
GOsummaries funding source(s)
The research is funded by Estonian Research Council [IUT34-4], target funding [SF0180008s12], ESNATS [HEALTH-F5-2008-201619] and European Regional Development Fund through the EXCS and BioMedIT projects.

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