GOsummaries pipeline

GOsummaries specifications

Information


Unique identifier OMICS_12481
Name GOsummaries
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 2.6.0
Stability Stable
Requirements Rcpp
Maintained Yes

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Maintainer


  • person_outline Raivo Kolde <>

Publication for GOsummaries

GOsummaries IN pipeline

2014
PMCID: 4303946
PMID: 25563934
DOI: 10.1186/1471-2164-15-S12-S5

[…] carried out in the r package venndiagram [25]. statistical significance and visualization of gene ontologies for different influences were presented in the form of a "word cloud" in the r package gosummaries [26]., in addition to the analysis of gene ontologies, the comparisons by kegg and cabio were made to compare the functional characteristics of genes that get activated at different […]

GOsummaries institution(s)
Institute of Computer Science, University of Tartu, Tartu, Estonia; Quretec, Tartu, Estonia; Center for Computational and Integrative Biology, Massachusetts General Hospital, Boston, MA, USA
GOsummaries funding source(s)
The research is funded by Estonian Research Council [IUT34-4], target funding [SF0180008s12], ESNATS [HEALTH-F5-2008-201619] and European Regional Development Fund through the EXCS and BioMedIT projects.

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