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Associated diseases

Associated diseases

GoSurfer specifications


Unique identifier OMICS_10341
Name GoSurfer
Software type Package/Module
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Operating system Windows
Computer skills Medium
Stability Stable
Maintained Yes


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Publication for GoSurfer

GoSurfer in publications

PMCID: 3532432
PMID: 23285241
DOI: 10.1371/journal.pone.0052983

[…] cytoscape plug-in for bingo . as reference for ontology analysis a list of all genes, which were expressed in wat at zt 18 (genes with significant expression call) was used. were visualized using gosurfer . heat maps of log-transformed normalized values were constructed using dchip software . raw data have been deposited in the geo database (www.ncbi.nlm.nih.gov/geo/), accession number […]

PMCID: 3087716
PMID: 21572528
DOI: 10.1371/journal.pone.0018378

[…] all probe sets or probe sets filtered for the basal cell signature genes. genes were assigned to functional categories with online utilities, including gather (http://gather.genome.duke.edu/) , gosurfer (http://bioinformatics.bioen.illinois.edu/gosurfer/) and ingenuity pathway analysis (ingenuity systems, redwood city, ca)., human airway epithelial basal cells purified from airway […]

PMCID: 3037853
PMID: 21261946
DOI: 10.1186/1471-2105-12-29

[…] a common choice of hypothesis test is fisher's exact test, which is used by tools such as gominer [], easeonline [] and fatigo []. other tools including clench [], go::termfinder [] gostat [], gosurfer [] and the netaffx go mining tool [] offer related tests based either on binomial, normal or χ2 approximations to the hypergeometric distribution., methods using the ora approach […]

PMCID: 2761415
PMID: 19761587
DOI: 10.1186/1471-230X-9-68

[…] correction for multiple testing., the functional terms (go terms) from the gene ontology were associated with promoters on the 1.5 kb promoter array (nimblegen) through affymetrix's probeids and gosurfer software http://bioinformatics.bioen.uiuc.edu/gosurfer/. go terms containing a significant over-representation of promoters with two fold hnf4α enrichment in the chip-chip analysis […]

PMCID: 2063513
PMID: 18000554
DOI: 10.1371/journal.pone.0001187

[…] the first three components accounted for 52.9% of the total variance with components 1, 2 and 3 accounting for 36.3, 9.5 and 7.1% of the variance, respectively., gene ontology (go) analysis using gosurfer revealed major categories for genes significantly altered by cocaine, which demonstrated changes in gene expression related to specific molecular functions, including angiogenesis, apoptosis […]

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GoSurfer institution(s)
Department of Biostatistics, Harvard School of Public Health, Boston, MA, USA

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