GOTHiC specifications

Information


Unique identifier OMICS_09466
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Mapped paired next-generation sequencing (NGS) reads.
Output data The list of significant interactions for a given bin size in the genome.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.12.0
Stability Stable
Requirements methods, utils, GenomicRanges, Biostrings, BSgenome, data.table
Maintained Yes

Download


Versioning


Add your version

Documentation


Maintainer


  • person_outline Borbala Mifsud <>

GOTHiC article

GOTHiC institution(s)
The Francis Crick Institute, London, UK; UCL Genetics Institute, University College London, London, UK; Nuclear Dynamics Programme, Babraham Institute, Cambridge, UK; Okinawa Institute of Science & Technology, Okinawa, Japan
GOTHiC funding source(s)
Supported by the EU, FP7 Epigenesys Network of Excellence, the Francis Crick Institute which receives its core funding from Cancer Research UK (FC001110), the UK Medical Research Council (FC001110), and the Wellcome Trust (FC001110), the Biotechnology and Biological Science Research Council, UK, the Medical Research Council, UK and an MRC eMedLab Medical Bioinformatics Career Development Fellowship, funded from award MR/L016311/1”.

GOTHiC reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review GOTHiC

Related Tools