GOToolBox statistics

info info

Citations per year

info

Popular tool citations

chevron_left Topology enrichment analysis GO semantic similarity analysis Over-representation analysis chevron_right
info

Tool usage distribution map

Tool usage distribution map
info info

Associated diseases

Associated diseases
Want to access the full stats & trends on this tool?

Protocols

GOToolBox specifications

Information


Unique identifier OMICS_04140
Name GOToolBox
Interface Web user interface
Restrictions to use Academic or non-commercial use
Computer skills Basic
Stability Stable
Maintained Yes

Publication for GOToolBox

GOToolBox citations

 (56)
library_books

Fank1 and Jazf1 promote multiciliated cell differentiation in the mouse airway epithelium

2018
PMCID: 5936064
PMID: 29661797
DOI: 10.1242/bio.033944

[…] (five chips per condition). data were analysed using the bioconductor package in r and raw data deposited in gene expression omnibus (geo) (gse111300). gene ontology analysis was performed using gotoolbox (http://genome.crg.es/gotoolbox/). the e11.5 tip microarray data have been previously published () and the raw data are available at geo (gse75860)., mtec cultures in transwell inserts […]

library_books

CATaDa reveals global remodelling of chromatin accessibility during stem cell differentiation in vivo

2018
PMCID: 5826290
PMID: 29481322
DOI: 10.7554/eLife.32341.029

[…] (). sequences for major clusters showing enrichment for a given cell type were then analysed using meme-chip ()., potentially regulated genes, with a peak height of at least 10 rpm were submitted to gotoolbox () for go analysis. go term enrichments (frequency in data set divided by expected frequency) were calculated for each cell type., gatc fragments were identified with at least a 10 rpm […]

library_books

BLISTER Regulates Polycomb Target Genes, Represses Stress Regulated Genes and Promotes Stress Responses in Arabidopsis thaliana

2017
PMCID: 5601981
PMID: 28955347
DOI: 10.3389/fpls.2017.01530

[…] included in further analyses., bli-1 differentially expressed genes were compared to indicated gene sets using virtualplant 1.3 (katari et al., ). for go term analysis we used the online resource gotoolbox (http://genome.crg.es/gotoolbox/), using hypergeometric test with benjamini-hochberg correction for statistical analysis and p-value determination. for goslim analysis we used the online […]

library_books

Decreased Brain pH as a Shared Endophenotype of Psychiatric Disorders

2017
PMCID: 5770757
PMID: 28776581
DOI: 10.1038/npp.2017.167

[…] (yielding 80 features; ) were selected based on the criteria of the basespace tool and assessed for enrichment in biological themes using the david functional annotation clustering tool, adgo, and gotoolbox, in which the default feature listings and algorithm settings were used., we first performed a meta-analysis of postmortem studies regarding brain ph in patients with schizophrenia […]

library_books

Upregulation of the Nr2f1 A830082K12Rik gene pair in murine neural crest cells results in a complex phenotype reminiscent of Waardenburg syndrome type 4

2016
PMCID: 5117235
PMID: 27585883
DOI: 10.1242/dmm.026773

[…] false discovery rate (benjamini–hochberg) procedure. for the go analysis, only differentially-expressed genes with an adjusted edger p-value ≤0.001 were included. the go analysis was performed using gotoolbox (http://genome.crg.es/gotoolbox) with enriched categories selected from a hypergeometric test based on a benjamini–hochberg-corrected p-value threshold of 0.05. revigo […]

library_books

A Comparative Proteome Analysis of Escherichia coli ΔrelA Mutant Cells

2016
PMCID: 5081369
PMID: 27833909
DOI: 10.3389/fbioe.2016.00078

[…] −0.32, and with an sdw inferior to 1.5 times the corresponding ratio., we have also examined the enrichment of gene ontology (go) biological processes in the differentially expressed proteins. the gotoolbox (martin et al., ) was used to retrieve overrepresented go terms related to biological processes in up and downregulated proteins. the following settings were used: annotation set – ecocyc […]


Want to access the full list of citations?
GOToolBox institution(s)
Laboratoire de Génétique et Physiologie du Développement, IBDM, CNRS/INSERM/Université de la Méditerranée, Parc Scientifique de Luminy, Marseille, France

GOToolBox reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review GOToolBox