GP statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Forward simulation chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

GP specifications

Information


Unique identifier OMICS_12950
Name GP
Alternative name GenomePop
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++
License GNU General Public License version 3.0
Computer skills Advanced
Version 2.7.4
Stability Stable
Maintained Yes

Versioning


Add your version

Documentation


Maintainer


  • person_outline Antonio Carvajal-Rodríguez <>

Publication for GenomePop

GP in publications

 (7)
PMCID: 5732370
PMID: 29246102
DOI: 10.1186/s12859-017-1988-y

[…] the test procedure is shown in fig. .fig. 1 , to assess the performance of our test, we simulated genetic data under three migration models: island (is) and stepping stone (ss), using the software genomepop 2.7 [], and isolation by distance (ibd), using ibdsimv2.0 []. we simulated the is and ss models with 4 populations, each with 25 individuals, and a single population under ibd with 100 […]

PMCID: 4460224
PMID: 26069460
DOI: 10.2174/1389202916666150313230943

[…] other measures could be assayed such as for example the average of positive svd (svdm) values., to test the ability of the svd and svdm methods for detecting the footprint of selection, the program genomepop [] was used to simulate two populations of facultative hermaphrodites under divergent selection and migration. each individual consisted of a diploid chromosome of length 1mb of biallelic […]

PMCID: 3700844
PMID: 23763838
DOI: 10.1186/1471-2105-14-192

[…] pathways, and epigenetic mechanisms, are studied using forward time simulators [,]. although current simulators exist for efficiently simulating large genomic regions — fregene, simupop, or genomepop — the memory management techniques do not extend to arbitrary genotype representations like pathways or metabolic networks or other mutation types like insertions or rearrangements [,]. […]

PMCID: 3561691
PMID: 23378848
DOI: 10.3389/fgene.2013.00009

[…] program does not force recombination breakpoints to occur between codons, thus allowing more realistic simulations (see arenas and posada, ). concerning the forward-time approach, only the programs genomepop (carvajal-rodriguez, ) and sfs_code (hernandez, ) implement the simulation of coding sequences with recombination., evolutionary scenarios that are not implemented in these programs […]

PMCID: 3364941
PMID: 22693434
DOI: 10.1371/journal.pcbi.1002495

[…] of view, those programs most commonly used, most user-friendly, and which implement the most diverse range of evolutionary scenarios., intracodon recombination is also allowed in netrecodon and genomepop., the arg can be exported from netrecodon and can be then visualized and analyzed using nettest ., under codon models, ω can change across codons., coding sequences are simulated […]


To access a full list of publications, you will need to upgrade to our premium service.

GP institution(s)
Departamento de Bioquímica, Genética e Inmunología Universidad de Vigo, Vigo, Spain
GP funding source(s)
Grant CPE03-004-C2, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA); Dirección Xeral de Investigación e Desenvolvemento, Xunta de Galicia; Isidro Parga Pondal research fellowship, Xunta de Galicia (Spain)

GP reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review GP