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GOMoDo / GPCR Online Modeling and Docking

A user friendly pipeline that puts together several state-of-the-art tools and allows experienced and inexperienced users to obtain GPCR’s homology models together with predictions of ligand binding poses. GOMoDo was developed to be flexible and adaptable to the user’s demands. For this reason, every step of the GOMoDo pipeline allows user intervention (if needed) to i) insert alignments, ii) use homology models generated by other methods, iii) predict binding cavities and iv) include experimental restraints for performing knowledge-based virtual docking experiments.