GPCR-SSFE specifications

Information


Unique identifier OMICS_18915
Name GPCR-SSFE
Alternative name G protein-coupled receptors-Sequence-Structure-Feature-Extractor
Restrictions to use None
Database management system MySQL
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes

Taxon


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus
    • Rattus norvegicus

Maintainers


  • person_outline Catherine Worth
  • person_outline Gerd Krause

Publications for G protein-coupled receptors-Sequence-Structure-Feature-Extractor

GPCR-SSFE citations

 (2)
library_books

In Silico Modeling of Human α2C Adrenoreceptor Interaction with Filamin 2

2014
PLoS One
PMCID: 4128582
PMID: 25110951
DOI: 10.1371/journal.pone.0103099

[…] addition to these aforementioned protein structure prediction servers, we used servers optimized to predict 3D structure of transmembrane proteins. Among these servers were: GPCRM , GPCR-ITASSER and GPCR-SSFE . These servers created 145 initial models in total, which were used as input for the QA-RecombineIt server . By using recombination of the initial models, the QA-RecombineIt generated 100 a […]

library_books

Molecular dynamics simulations on the Tre1 G protein coupled receptor: exploring the role of the arginine of the NRY motif in Tre1 structure

2013
BMC Struct Biol
PMCID: 3848830
PMID: 24044607
DOI: 10.1186/1472-6807-13-15

[…] redicts protein structures through the use of threading. To further study Tre1 structure, a third independent structure of Tre1 could be built. For example, GPCR-Sequence Structure Feature Extractor (GPCR-SSFE) could be used to generate another starting structure. GPCR-SSFE is a database in addition to a homology modeling program that creates homology models of GPCRs using multiple templates and t […]

GPCR-SSFE institution(s)
Department of Structural Biology, Leibniz-Forschungsinstitut fur Molekulare Pharmakologie (FMP), Berlin, Germany; Institute of Medical Physics and Biophysics, Charite-Universitatsmedizin, Berlin, Germany; Institute of Experimental Pediatric Endocrinology, Charite-Universitatsmedizin, Berlin, Germany; Institute of Medical Physics and Biophysics, Leipzig University, Leipzig, Germany
GPCR-SSFE funding source(s)
Supported by Deutsche Forschungsgemeinschaft (DFG) [KR 1273/4-2, DFG HI 1502/1-2, BI 893/8].

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