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GPCRsclass specifications

Information


Unique identifier OMICS_24482
Name GPCRsclass
Software type Application/Script
Interface Web user interface
Restrictions to use None
Input data A protein sequence.
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


Publication for GPCRsclass

GPCRsclass citations

 (4)
library_books

Eukaryotic G protein coupled receptors as descendants of prokaryotic sodium translocating rhodopsins

2015
Biol Direct
PMCID: 4608122
PMID: 26472483
DOI: 10.1186/s13062-015-0091-4

[…] uthors’ response: Following the suggestion of the Reviewer, we have attempted to analyze the differences in amino acid and dipeptide composition between GPCRs and MRs using the existing web-servers – GPCRsclass [], GPCR-Mpredictor [], PCA-GPCR [], and 7TMRmine [].The server GPCRsclass [] (available at http://www.imtech.res.in/raghava/gpcrsclass/) gave the same result “Your protein does not belong […]

library_books

A Survey of Computational Intelligence Techniques in Protein Function Prediction

2014
Int J Proteomics
PMCID: 4276698
PMID: 25574395
DOI: 10.1155/2014/845479

[…] ein sequence. The SVMPort (http://jing.cz3.nus.edu.sg/cgi-bin/svmprot.cgi) [] is the web server to predict protein function by using sequence and structure derived properties of protein sequence. The GPCRsclass (http://www.imtech.res.in/raghava/gpcrsclass/) [] is the SVM based web server to predict the G-protein coupled receptors and their subfamilies by using amino acid and dipeptide composition […]

library_books

7TMRmine: a Web server for hierarchical mining of 7TMR proteins

2009
BMC Genomics
PMCID: 2718930
PMID: 19538753
DOI: 10.1186/1471-2164-10-275

[…] s as well as the classification results can be downloaded from this page for further analysis. For example, protein sequences can be submitted to GPCR classification tools such as GPCRsIdentifier [], GPCRsclass and GPCRpred [,], and GPCRTree [] for further family classification. […]

library_books

GPCRTree: online hierarchical classification of GPCR function

2008
BMC Res Notes
PMCID: 2547103
PMID: 18717986
DOI: 10.1186/1756-0500-1-67

[…] s [,] and machine learning methods such as Hidden Markov Models [,] and Support Vector Machines (SVMs) []. Several publicly-available SVM-based GPCR classifiers exist: PRED-GPCR [,], GPCR-PRED [] and GPCRsclass []. Some predictive techniques have used a combination of SVMs and HMMs []. Other approaches towards GPCR Classification have included Self-Organising Maps [], Quasi-predictor Feature Class […]

Citations

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GPCRsclass institution(s)
Bioinformatics Center, Institute of Microbial Technology, Chandigarh, India

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