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GPDB specifications

Information


Unique identifier OMICS_06793
Name GPDB
Alternative name GlycoProtDB
Restrictions to use None
Maintained No

Taxon


  • Invertebrates
    • Caenorhabditis elegans
  • Rodents
    • Mus musculus

Publication for GlycoProtDB

GPDB citations

 (3)
library_books

Predicting the Coupling Specificity of G protein Coupled Receptors to G proteins by Support Vector Machines

2016
PMCID: 5173181
PMID: 16689694
DOI: 10.1016/S1672-0229(05)03035-4

[…] In this study, 124 human GPCR sequences (62, 33, and 29 sequences for Gi/o-, Gq/11-, Gs-class, respectively) were collected from the gpDB database , which were used to develop the SVM classifiers for three classes of GPCRs. Ten-fold cross-validation process was used to evaluate the performance of the proposed method, that is, nine […]

library_books

The Repertoire of Heterotrimeric G Proteins and RGS Proteins in Ciona intestinalis

2009
PLoS One
PMCID: 2752167
PMID: 19806206
DOI: 10.1371/journal.pone.0007349

[…] Multiple sequence alignment of the Ciona sequences with known orthologs picked up from the gpDB database was performed using CLUSTALX 1.8 program using the default parameters for substitution matrices and gap penalties. Manual adjustments of the alignments were made when necessary using th […]

library_books

Whole proteome identification of plant candidate G protein coupled receptors in Arabidopsis, rice, and poplar: computational prediction and in vivo protein coupling

2008
Genome Biol
PMCID: 2530877
PMID: 18671868
DOI: 10.1186/gb-2008-9-7-r120

[…] the SEVENS database [] contain only GCR1 and sequences from the mildew locus o (MLO) family, although SEVENS also includes GCR2 and its two homologs. Searches of the GPCR/G-protein/effector database gpDB [] did not identify any plant sequences in the GPCR category.To circumvent these problems, we have developed a combinatorial approach to identify novel GPCRs based on the direct prediction of GPC […]

Citations

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GPDB institution(s)
Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba, Ibaraki, Japan

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