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GPI-SOM

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A Kohonen self-organizing map was developed that predicts GPI-anchored proteins with high accuracy. In combination with SignalP, GPI-SOM was used in genome-wide surveys for GPI-anchored proteins in diverse eukaryotes. Apart from specialized parasites, a general trend towards higher percentages of GPI-anchored proteins in larger proteomes was observed.

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GPI-SOM classification

  • Animals
  • Fungi
  • Plants
  • Protists

GPI-SOM specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
C
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes

GPI-SOM distribution

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No open topic.

GPI-SOM classification

  • Animals
  • Fungi
  • Plants
  • Protists

GPI-SOM specifications

Interface:
Web user interface
Programming languages:
C
Stability:
Stable
Restrictions to use:
None
Computer skills:
Basic
Maintained:
Yes

GPI-SOM support

Maintainer

  • Pascal Mäeser <>
  • Pascal Mäeser <>

Credits

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Publications

Institution(s)

Institute of Cell Biology, University of Bern, Switzerland

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