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GPI specifications
Information
Unique identifier | OMICS_03229 |
---|---|
Name | GPI |
Alternative name | GenoPlante-Info |
Restrictions to use | None |
Maintained | Yes |
Taxon
-
Plants and Fungi
- Arabidopsis thaliana
- Oryza sativa
- Triticum aestivum
Publication for GenoPlante-Info
GénoPlante-Info (GPI): a collection of databases and bioinformatics resources for plant genomics.
GPI citations
(6)QTLs and candidate genes for desiccation and abscisic acid content in maize kernels
[…] tional file . They were designed based on Gene Bank data http://www.ncbi.nlm.nih.gov/Genbank/ for aquaporins using the accession numbers provided in [] and based on the maize EST assembly produced by Genoplante-Info and now housed at the URGI http://urgi.versailles.inra.fr/GnpSeq/ for LEA, RAB and other maturation-related genes.For qRT-PCR, RNA isolation was carried out essentially as previously d […]
Subcellular localization and expression of multiple tomato γ aminobutyrate transaminases that utilize both pyruvate and glyoxylate
[…] ctions of the subcellular localizations of various known mitochondrion and plastid proteins and the tomato GABA-T isoforms were obtained using the web-based bioinformatic programs Predotar () (http://genoplante-info.infobiogen.fr/predotar/), TargetP () (http://www.cbs.dtu.dk/services/TargetP/), MitoProt () (http://ihg2.helmholtz-muenchen.de/ihg/mitoprot.html), ChloroP () (http://www.cbs.dtu.dk/ser […]
Expression of cell wall related genes in basal and ear internodes of silking brown midrib 3, caffeic acid O methyltransferase (COMT) down regulated, and normal maize plants
[…] rimary and secondary cell wall biosynthesis and assembly for all species throughout the plant kingdom. Maize orthologous genes were found from BLAST (blastn and tblastx) searches [] performed against GenoPlante-Info databases [].Membrane hybridizations and data analyses were achieved according to a protocol adapted from Pesquet et al. [] and developed in Guillaumie et al. []. Each GST was diluted […]
Identification and characterization of a plastid localized Arabidopsis glyoxylate reductase isoform: comparison with a cytosolic isoform and implications for cellular redox homeostasis and aldehyde detoxification
[…] ww.expasy.org/tools/) predicted the existence of a transit peptide that varied in length from 29 to 36 amino acids (), although the subcellular location of GR2 was ambiguous, with Predator () (http://genoplante-info.infobiogen.fr/predotar/), and TargetP favouring a mitochondrial location, and ChloroP and PSORT favouring a plastidial location (data not shown). As a compromise, in this study the N-t […]
Tomato linalool synthase is induced in trichomes by jasmonic acid
[…] MTS2 from the hypocotyl and root cDNA library. Sequences can be found in Genbank as AY840091 and AY840092, respectively. The presence of plastid targeting signals was predicted using PREDOTAR (http://genoplante-info.infobiogen.fr/predotar/predotar.html; Small et al. ) and TargetP (http://www.cbs.dtu.dk/services/TargetP/; Emanuelsson et al. ). […]
Inferring Hypotheses on Functional Relationships of Genes: Analysis of the Arabidopsis thaliana Subtilase Gene Family
[…] (http://www.ncbi.nlm.nih.gov), and MIPS (http://mips.gsf.de/). Subcellular localization was predicted using either TargetP V1.0 [] (http://www.cbs.dtu.dk/services/TargetP/) or PredoTar V1.03 (http://genoplante-info.infobiogen.fr/predotar/predotar.html). The deduced amino acid sequences were aligned using the CLUSTALX program [] with the default parameter settings and manually improved with respec […]
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