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GPI specifications

Information


Unique identifier OMICS_03229
Name GPI
Alternative name GenoPlante-Info
Restrictions to use None
Maintained Yes

Taxon


  • Plants and Fungi
    • Arabidopsis thaliana
    • Oryza sativa
    • Triticum aestivum

Publication for GenoPlante-Info

GPI citations

 (6)
library_books

QTLs and candidate genes for desiccation and abscisic acid content in maize kernels

2010
BMC Plant Biol
PMCID: 2826337
PMID: 20047666
DOI: 10.1186/1471-2229-10-2

[…] tional file . They were designed based on Gene Bank data http://www.ncbi.nlm.nih.gov/Genbank/ for aquaporins using the accession numbers provided in [] and based on the maize EST assembly produced by Genoplante-Info and now housed at the URGI http://urgi.versailles.inra.fr/GnpSeq/ for LEA, RAB and other maturation-related genes.For qRT-PCR, RNA isolation was carried out essentially as previously d […]

library_books

Subcellular localization and expression of multiple tomato γ aminobutyrate transaminases that utilize both pyruvate and glyoxylate

2009
J Exp Bot
PMCID: 2718222
PMID: 19470656
DOI: 10.1093/jxb/erp161

[…] ctions of the subcellular localizations of various known mitochondrion and plastid proteins and the tomato GABA-T isoforms were obtained using the web-based bioinformatic programs Predotar () (http://genoplante-info.infobiogen.fr/predotar/), TargetP () (http://www.cbs.dtu.dk/services/TargetP/), MitoProt () (http://ihg2.helmholtz-muenchen.de/ihg/mitoprot.html), ChloroP () (http://www.cbs.dtu.dk/ser […]

call_split

Expression of cell wall related genes in basal and ear internodes of silking brown midrib 3, caffeic acid O methyltransferase (COMT) down regulated, and normal maize plants

2008
BMC Plant Biol
PMCID: 2453129
PMID: 18582385
DOI: 10.1186/1471-2229-8-71
call_split See protocol

[…] rimary and secondary cell wall biosynthesis and assembly for all species throughout the plant kingdom. Maize orthologous genes were found from BLAST (blastn and tblastx) searches [] performed against GenoPlante-Info databases [].Membrane hybridizations and data analyses were achieved according to a protocol adapted from Pesquet et al. [] and developed in Guillaumie et al. []. Each GST was diluted […]

library_books

Identification and characterization of a plastid localized Arabidopsis glyoxylate reductase isoform: comparison with a cytosolic isoform and implications for cellular redox homeostasis and aldehyde detoxification

2008
J Exp Bot
PMCID: 2423656
PMID: 18495639
DOI: 10.1093/jxb/ern123

[…] ww.expasy.org/tools/) predicted the existence of a transit peptide that varied in length from 29 to 36 amino acids (), although the subcellular location of GR2 was ambiguous, with Predator () (http://genoplante-info.infobiogen.fr/predotar/), and TargetP favouring a mitochondrial location, and ChloroP and PSORT favouring a plastidial location (data not shown). As a compromise, in this study the N-t […]

call_split

Tomato linalool synthase is induced in trichomes by jasmonic acid

2007
Plant Mol Biol
PMCID: 1876254
PMID: 17440821
DOI: 10.1007/s11103-007-9149-8
call_split See protocol

[…] MTS2 from the hypocotyl and root cDNA library. Sequences can be found in Genbank as AY840091 and AY840092, respectively. The presence of plastid targeting signals was predicted using PREDOTAR (http://genoplante-info.infobiogen.fr/predotar/predotar.html; Small et al. ) and TargetP (http://www.cbs.dtu.dk/services/TargetP/; Emanuelsson et al. ). […]

library_books

Inferring Hypotheses on Functional Relationships of Genes: Analysis of the Arabidopsis thaliana Subtilase Gene Family

2005
PLoS Comput Biol
PMCID: 1236819
PMID: 16193095
DOI: 10.1371/journal.pcbi.0010040

[…] (http://www.ncbi.nlm.nih.gov), and MIPS (http://mips.gsf.de/). Subcellular localization was predicted using either TargetP V1.0 [] (http://www.cbs.dtu.dk/services/TargetP/) or PredoTar V1.03 (http://genoplante-info.infobiogen.fr/predotar/predotar.html). The deduced amino acid sequences were aligned using the CLUSTALX program [] with the default parameter settings and manually improved with respec […]

Citations

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GPI institution(s)
Génoplante-Info, Unité de Recherche Génomique-Info, INRA, Infobiogen, Evry, France

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